{"id":"https://openalex.org/W2775805069","doi":"https://doi.org/10.1109/bibm.2017.8217954","title":"Data provenance management for bioinformatics workflows using NoSQL database systems in a cloud computing environment","display_name":"Data provenance management for bioinformatics workflows using NoSQL database systems in a cloud computing environment","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2775805069","doi":"https://doi.org/10.1109/bibm.2017.8217954","mag":"2775805069"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217954","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217954","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005756310","display_name":"Fernanda Hondo","orcid":"https://orcid.org/0009-0008-9982-3547"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Fernanda Hondo","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071647035","display_name":"Polyane Wercelens","orcid":"https://orcid.org/0000-0002-8494-1267"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Polyane Wercelens","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004814984","display_name":"Waldeyr Mendes Cordeiro da Silva","orcid":"https://orcid.org/0000-0002-8660-6331"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Waldeyr da Silva","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041493391","display_name":"Klayton Castro","orcid":"https://orcid.org/0000-0003-0544-4527"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Klayton Castro","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017316828","display_name":"Ingrid Santana","orcid":null},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ingrid Santana","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071276748","display_name":"Maria Em\u00edlia M. T. Walter","orcid":"https://orcid.org/0000-0001-6822-931X"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria Emilia Walter","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031701924","display_name":"Alet\u00e9ia Ara\u00fajo","orcid":"https://orcid.org/0000-0003-4645-6700"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Aleteia Araujo","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054089208","display_name":"Maristela Holanda","orcid":"https://orcid.org/0000-0002-0883-2579"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maristela Holanda","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085416987","display_name":"S\u00e9rgio Lifschitz","orcid":"https://orcid.org/0000-0003-3073-3734"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontifical Catholic University of Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sergio Lifschitz","raw_affiliation_strings":["Informatics Department, Pontifical Catholic University of Rio de Janeiro, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"Informatics Department, Pontifical Catholic University of Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5005756310"],"corresponding_institution_ids":["https://openalex.org/I150729083"],"apc_list":null,"apc_paid":null,"fwci":5.6912,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.96151401,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1929","last_page":"1934"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nosql","display_name":"NoSQL","score":0.9454107880592346},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8424627184867859},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8148869276046753},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8067327737808228},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6479603052139282},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4604227542877197},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.37057989835739136},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3680139183998108},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3054494261741638},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08853223919868469}],"concepts":[{"id":"https://openalex.org/C2779599972","wikidata":"https://www.wikidata.org/wiki/Q82231","display_name":"NoSQL","level":3,"score":0.9454107880592346},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8424627184867859},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8148869276046753},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8067327737808228},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6479603052139282},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4604227542877197},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.37057989835739136},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3680139183998108},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3054494261741638},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08853223919868469},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2017.8217954","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217954","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W46481038","https://openalex.org/W1621502610","https://openalex.org/W1979859641","https://openalex.org/W1981868776","https://openalex.org/W1997512351","https://openalex.org/W2006921756","https://openalex.org/W2011657487","https://openalex.org/W2015234709","https://openalex.org/W2058488904","https://openalex.org/W2080071958","https://openalex.org/W2084153822","https://openalex.org/W2091076764","https://openalex.org/W2097288488","https://openalex.org/W2117267833","https://openalex.org/W2127918861","https://openalex.org/W2130412392","https://openalex.org/W2160969485","https://openalex.org/W2165741325","https://openalex.org/W2275530856","https://openalex.org/W2344809536","https://openalex.org/W2346143774","https://openalex.org/W2480425305","https://openalex.org/W2482127814","https://openalex.org/W2562051831","https://openalex.org/W2574208942","https://openalex.org/W2578137684","https://openalex.org/W2604713509","https://openalex.org/W2620784187","https://openalex.org/W2735271215","https://openalex.org/W6652335317"],"related_works":["https://openalex.org/W2126420512","https://openalex.org/W2108941518","https://openalex.org/W3157676313","https://openalex.org/W1841120357","https://openalex.org/W2884115854","https://openalex.org/W2884906776","https://openalex.org/W4313444821","https://openalex.org/W2620249060","https://openalex.org/W2473889978","https://openalex.org/W2236555801"],"abstract_inverted_index":{"Computer":[0],"science":[1],"solutions":[2],"for":[3,77,91],"molecular":[4],"biology":[5],"problems":[6],"are":[7],"often":[8],"presented":[9],"in":[10,48,68,109,129,154],"the":[11,31,65,70,84,92,110,142,168],"form":[12],"of":[13,19,148,170],"workflows.":[14],"There":[15],"is":[16,74],"a":[17,35,62,75,121,125],"set":[18,95],"activities":[20],"performed":[21],"by":[22,40,61],"different":[23,146],"processing":[24],"entities":[25],"through":[26],"managed":[27],"tasks.":[28],"Knowledge":[29],"about":[30,124],"data":[32,41,139],"trajectory":[33],"throughout":[34],"given":[36],"workflow":[37,127],"enables":[38],"reproducibility":[39],"provenance.":[42],"In":[43],"order":[44],"to":[45,94,141,175],"reproduce":[46],"an":[47,98,130],"silico":[49],"bioinformatics":[50,126],"experiment":[51],"one":[52],"must":[53],"consider":[54],"other":[55],"aspects":[56],"besides":[57],"those":[58],"steps":[59],"followed":[60],"workflow.":[63],"Indeed,":[64],"computational":[66],"settings":[67],"which":[69],"involved":[71],"programs":[72],"run":[73],"requirement":[76],"reproducibility.":[78],"Cloud":[79],"computing":[80,133],"technology":[81],"may":[82],"hide":[83],"technical":[85],"details":[86],"and":[87,119],"make":[88],"it":[89],"easier":[90],"user":[93],"up":[96],"such":[97],"on-demand":[99],"environment.":[100,134],"NoSQL":[101,149,172],"database":[102,150,173],"systems":[103,174],"have":[104,117,136,166],"also":[105],"gained":[106],"popularity,":[107],"particularly":[108],"cloud.":[111],"Considering":[112],"this":[113,155],"particular":[114],"scenario,":[115],"we":[116,165],"planned":[118],"executed":[120],"research":[122,162],"study":[123],"running":[128],"IaaS":[131],"cloud":[132],"We":[135,152],"persisted":[137],"provenance":[138,177],"according":[140],"PROV-DM":[143],"model,":[144],"using":[145],"types":[147],"systems.":[151],"present":[153],"paper":[156],"some":[157],"preliminary":[158],"results":[159],"from":[160],"our":[161],"work,":[163],"where":[164],"explored":[167],"characteristics":[169],"several":[171],"persist":[176],"data.":[178]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
