{"id":"https://openalex.org/W2775597185","doi":"https://doi.org/10.1109/bibm.2017.8217942","title":"When technology meets technology: Retrained \u2018Inception V3\u2019 classifier for NGS based pathogen detection","display_name":"When technology meets technology: Retrained \u2018Inception V3\u2019 classifier for NGS based pathogen detection","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2775597185","doi":"https://doi.org/10.1109/bibm.2017.8217942","mag":"2775597185"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217942","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217942","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079350525","display_name":"Rohita Sinha","orcid":"https://orcid.org/0009-0008-0893-914X"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rohita Sinha","raw_affiliation_strings":["Food Science and Technology, University of Nebraska, Lincoln Lincoln, NE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Food Science and Technology, University of Nebraska, Lincoln Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034823498","display_name":"Jennifer Clarke","orcid":"https://orcid.org/0000-0002-2723-7249"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Clarke","raw_affiliation_strings":["Statistics, Food Science and Technology, University of Nebraska, Lincoln Lincoln, NE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Statistics, Food Science and Technology, University of Nebraska, Lincoln Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I114395901"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11393","display_name":"Biosensors and Analytical Detection","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6447778940200806},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6189520359039307},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.500802755355835},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3593597710132599},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33857351541519165},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32568514347076416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16391921043395996}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6447778940200806},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6189520359039307},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.500802755355835},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3593597710132599},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33857351541519165},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32568514347076416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16391921043395996}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2017.8217942","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217942","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W132173676","https://openalex.org/W1966597734","https://openalex.org/W2050820276","https://openalex.org/W2058007140","https://openalex.org/W2081930221","https://openalex.org/W2104846587","https://openalex.org/W2131026689","https://openalex.org/W2159954944","https://openalex.org/W2183341477","https://openalex.org/W2337747100","https://openalex.org/W2396849069","https://openalex.org/W2618530766","https://openalex.org/W2730233141","https://openalex.org/W2950853723"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W2033914206","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Accurate":[0],"characterization":[1],"of":[2,19,29,35,77,85,91,107,114,123,138,177,187],"pathogenic":[3],"microbes":[4,36,179],"that":[5,62],"may":[6],"be":[7],"present":[8,99],"in":[9,16,142,181],"food":[10],"or":[11,83],"clinical":[12],"samples":[13],"is":[14],"essential":[15],"the":[17,33,86,105,108,175],"design":[18],"appropriate":[20],"intervention":[21],"strategies.":[22],"Inherent":[23],"genomic":[24],"patterns":[25],"(codon-biases":[26],"and":[27,42,81,96,111,147,150,161,165],"rate":[28],"evolution)":[30],"do":[31],"simplify":[32],"classification":[34,47,53,71,122],"at":[37,48,54],"most":[38],"taxonomic":[39,57],"levels":[40,58],"(genus":[41],"above),":[43],"but":[44],"mostly":[45],"blur":[46],"Species/Strain":[49],"levels.":[50],"Hence,":[51],"their":[52],"these":[55],"finer":[56],"requires":[59],"high-resolution":[60],"genomic-data":[61,127],"provide":[63],"SNP":[64],"(Single":[65],"Nucleotide":[66],"Polymorphism)":[67],"level":[68],"precision.":[69],"Existing":[70],"methods":[72],"involve":[73],"either":[74],"targeted":[75],"amplification":[76],"sero-specific":[78],"genes":[79],"(serotyping":[80],"MLST)":[82],"sequencing":[84],"entire":[87,189],"microbial":[88,190],"genome,":[89],"both":[90],"which":[92,103],"require":[93],"extra":[94],"time":[95],"resources.":[97],"We":[98,168],"a":[100,143,182],"computational":[101],"approach,":[102],"harnesses":[104],"power":[106],"metagenomic":[109,183],"NGS-data":[110],"object-detection":[112],"abilities":[113],"Convolutional":[115],"Neural":[116],"Networks":[117],"(CNN)(Inception":[118],"V3),":[119],"for":[120],"precise":[121],"pathogens":[124,156],"by":[125],"converting":[126],"(NGS-reads)":[128],"into":[129],"images":[130],"(nucleotide-by-color).":[131],"A":[132],"small":[133],"scale":[134],"retraining":[135],"(<;50":[136],"images/class)":[137],"`Inception":[139],"V3'":[140],"resulted":[141],"classifier":[144],"with":[145],"100%":[146],"96%":[148],"validation":[149],"test":[151],"accuracies,":[152],"respectively,":[153],"when":[154],"classifying":[155],"such":[157],"as":[158],"Campylobacter":[159],"coli/jejuni":[160],"Escherichia":[162],"coli":[163],"(O157:H7":[164],"Non":[166],"O157-STECs).":[167],"aim":[169],"to":[170,174],"extend":[171],"this":[172],"protocol":[173],"detection":[176],"several":[178],"(multiple-objects)":[180],"image":[184,186],"(genomic":[185],"an":[188],"community).":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}