{"id":"https://openalex.org/W2774645159","doi":"https://doi.org/10.1109/bibm.2017.8217853","title":"Performing local network alignment by ensembling global aligners","display_name":"Performing local network alignment by ensembling global aligners","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2774645159","doi":"https://doi.org/10.1109/bibm.2017.8217853","mag":"2774645159"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217853","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048806726","display_name":"Hazel Nicolette Manners","orcid":null},"institutions":[{"id":"https://openalex.org/I197465736","display_name":"North Eastern Hill University","ror":"https://ror.org/055m2tx54","country_code":"IN","type":"education","lineage":["https://openalex.org/I197465736"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Hazel N Manners","raw_affiliation_strings":["Dept of Information Technology, North-Eastern Hill University, India"],"affiliations":[{"raw_affiliation_string":"Dept of Information Technology, North-Eastern Hill University, India","institution_ids":["https://openalex.org/I197465736"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080365501","display_name":"Ahed Elmsallati","orcid":"https://orcid.org/0000-0002-1557-4790"},"institutions":[{"id":"https://openalex.org/I16496490","display_name":"McKendree University","ror":"https://ror.org/042z7qa37","country_code":"US","type":"education","lineage":["https://openalex.org/I16496490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ahed Elmsallati","raw_affiliation_strings":["Division of Computing, McKendree University, USA"],"affiliations":[{"raw_affiliation_string":"Division of Computing, McKendree University, USA","institution_ids":["https://openalex.org/I16496490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037399554","display_name":"Pietro Hiram Guzzi","orcid":"https://orcid.org/0000-0001-5542-2997"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pietro H Guzzi","raw_affiliation_strings":["Dept of Surgical Medical Sciences, University of Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"Dept of Surgical Medical Sciences, University of Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010413185","display_name":"Swarup Roy","orcid":"https://orcid.org/0000-0002-0011-3633"},"institutions":[{"id":"https://openalex.org/I197465736","display_name":"North Eastern Hill University","ror":"https://ror.org/055m2tx54","country_code":"IN","type":"education","lineage":["https://openalex.org/I197465736"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Swarup Roy","raw_affiliation_strings":["Dept of Information Technology, North-Eastern Hill University, India"],"affiliations":[{"raw_affiliation_string":"Dept of Information Technology, North-Eastern Hill University, India","institution_ids":["https://openalex.org/I197465736"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049180880","display_name":"Jugal Kalita","orcid":"https://orcid.org/0000-0002-8765-7018"},"institutions":[{"id":"https://openalex.org/I888729015","display_name":"University of Colorado Colorado Springs","ror":"https://ror.org/054spjc55","country_code":"US","type":"education","lineage":["https://openalex.org/I888729015"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jugal K Kalita","raw_affiliation_strings":["Dept of Computer Science, University of Colorado, Colorado Springs, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Computer Science, University of Colorado, Colorado Springs, USA","institution_ids":["https://openalex.org/I888729015"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5048806726"],"corresponding_institution_ids":["https://openalex.org/I197465736"],"apc_list":null,"apc_paid":null,"fwci":0.319,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.59287112,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"39","issue":null,"first_page":"1316","last_page":"1323"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9671000242233276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9563999772071838,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.6690675616264343},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6569989919662476},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5838168263435364},{"id":"https://openalex.org/keywords/voting","display_name":"Voting","score":0.45453599095344543},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44989296793937683},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4325946867465973},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4259575605392456},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3440180718898773},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33291035890579224},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32301026582717896}],"concepts":[{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.6690675616264343},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6569989919662476},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5838168263435364},{"id":"https://openalex.org/C520049643","wikidata":"https://www.wikidata.org/wiki/Q189760","display_name":"Voting","level":3,"score":0.45453599095344543},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44989296793937683},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4325946867465973},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4259575605392456},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3440180718898773},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33291035890579224},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32301026582717896},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2017.8217853","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5400000214576721}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W181475574","https://openalex.org/W1686696692","https://openalex.org/W1966631994","https://openalex.org/W1984209790","https://openalex.org/W1984249061","https://openalex.org/W2007448777","https://openalex.org/W2016305540","https://openalex.org/W2024166504","https://openalex.org/W2039872058","https://openalex.org/W2043795984","https://openalex.org/W2056124433","https://openalex.org/W2070071277","https://openalex.org/W2102610205","https://openalex.org/W2118853019","https://openalex.org/W2125179362","https://openalex.org/W2127957894","https://openalex.org/W2131298592","https://openalex.org/W2132253035","https://openalex.org/W2136845897","https://openalex.org/W2140412523","https://openalex.org/W2149037310","https://openalex.org/W2155834877","https://openalex.org/W2167139431","https://openalex.org/W2168474259","https://openalex.org/W2171081680","https://openalex.org/W2171108134","https://openalex.org/W2254156100","https://openalex.org/W2285492847","https://openalex.org/W2339292510","https://openalex.org/W2569705007","https://openalex.org/W2578633072","https://openalex.org/W2607363173","https://openalex.org/W3106276089","https://openalex.org/W4210839099","https://openalex.org/W6647421782","https://openalex.org/W6651840907","https://openalex.org/W6704195814"],"related_works":["https://openalex.org/W1603736412","https://openalex.org/W2103111323","https://openalex.org/W2735206154","https://openalex.org/W3125543343","https://openalex.org/W4379507457","https://openalex.org/W4304185162","https://openalex.org/W1571174692","https://openalex.org/W2605045482","https://openalex.org/W3124440861","https://openalex.org/W2111816976"],"abstract_inverted_index":{"Interactions":[0],"among":[1,25,36],"proteins":[2],"are":[3,111,133],"important":[4],"mechanisms":[5],"in":[6,173,193,195],"living":[7],"cells.":[8],"The":[9],"whole":[10],"set":[11],"of":[12,34,55,85,184],"interactions":[13,35],"is":[14,40,73],"often":[15],"referred":[16],"to":[17,81,94],"as":[18,59],"a":[19,52],"protein-protein":[20],"interaction":[21],"network":[22,43],"(PIN).":[23],"Comparison":[24],"such":[26,58],"networks":[27,50],"may":[28],"discover":[29],"conserved":[30,61],"(or":[31],"disrupted)":[32],"patterns":[33],"species.":[37],"Such":[38],"comparison":[39,194],"performed":[41],"using":[42,158],"alignment":[44,105],"algorithms.":[45],"They":[46],"help":[47],"analyse":[48],"PPI":[49,160],"for":[51],"better":[53],"understanding":[54],"biological":[56],"processes":[57],"finding":[60,115],"regions":[62],"between":[63],"species,":[64],"giving":[65],"us":[66],"insight":[67],"into":[68,127],"their":[69,125],"evolution.":[70],"However,":[71],"there":[72],"no":[74],"best":[75],"aligner":[76],"or":[77],"standard":[78],"evaluation":[79],"measure":[80],"assess":[82],"the":[83,165,179,182,185],"quality":[84],"alignments.":[86],"In":[87],"this":[88],"work,":[89],"we":[90],"use":[91],"several":[92],"aligners":[93,120,189],"produce":[95],"an":[96],"ensembled":[97],"result,":[98],"which":[99],"can":[100],"further":[101],"improve":[102],"individual":[103],"aligners'":[104],"quality.":[106],"Two":[107],"basic":[108],"ensemble":[109,169,180],"approaches":[110],"used:":[112],"One":[113],"by":[114,123,181,187],"majority":[116,166],"node":[117],"mappings":[118],"from":[119],"and":[121,148,197],"another":[122],"combining":[124],"results":[126],"one":[128],"final":[129],"alignment.":[130],"These":[131],"alignments":[132],"then":[134],"evaluated":[135],"based":[136,168],"on":[137],"three":[138],"scoring":[139],"schemes:":[140],"Gene":[141],"Ontology":[142],"Consistency":[143],"(GOC),":[144],"Node":[145],"Coverage":[146],"(NCV)":[147],"Generalised":[149],"Symmetric":[150],"Substructure":[151],"Score":[152],"(GS":[153],"<sup":[154,175],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[155,176],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">3</sup>":[156,177],")":[157],"IsoBase":[159],"networks.":[161],"Results":[162],"show":[163],"that":[164],"voting":[167],"scheme":[170],"performs":[171],"well":[172],"GS":[174],"while":[178],"union":[183],"decision":[186],"different":[188],"produces":[190],"satisfactory":[191],"outcomes":[192],"GOC":[196],"NCV":[198],"scores.":[199]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
