{"id":"https://openalex.org/W2774698037","doi":"https://doi.org/10.1109/bibm.2017.8217849","title":"Data integration through ontology-based data access to support integrative data analysis: A case study of cancer survival","display_name":"Data integration through ontology-based data access to support integrative data analysis: A case study of cancer survival","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2774698037","doi":"https://doi.org/10.1109/bibm.2017.8217849","mag":"2774698037","pmid":"https://pubmed.ncbi.nlm.nih.gov/29707415"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217849","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217849","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039891212","display_name":"Hansi Zhang","orcid":"https://orcid.org/0000-0003-4585-0888"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hansi Zhang","raw_affiliation_strings":["Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA"],"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052505769","display_name":"Yi Guo","orcid":"https://orcid.org/0000-0003-0587-4105"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Guo","raw_affiliation_strings":["Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA"],"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340657","display_name":"Qian Li","orcid":"https://orcid.org/0000-0003-1529-7014"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian Li","raw_affiliation_strings":["Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA"],"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020154592","display_name":"Thomas J. George","orcid":"https://orcid.org/0000-0002-6249-9180"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas J. George","raw_affiliation_strings":["The Division of Hematology and Oncology, Department of Medicine, University of Florida, Gainesville, Florida, USA","The Division of Hematology and Oncology, University of Florida, Gainesville, Florida, USA"],"affiliations":[{"raw_affiliation_string":"The Division of Hematology and Oncology, Department of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":[]},{"raw_affiliation_string":"The Division of Hematology and Oncology, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026803588","display_name":"Elizabeth Shenkman","orcid":"https://orcid.org/0000-0003-4903-1804"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth A. Shenkman","raw_affiliation_strings":["Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA"],"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030951014","display_name":"Jiang Bian","orcid":"https://orcid.org/0000-0002-2238-5429"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiang Bian","raw_affiliation_strings":["Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA"],"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5039891212"],"corresponding_institution_ids":["https://openalex.org/I2800717037"],"apc_list":null,"apc_paid":null,"fwci":1.8693,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.89579653,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2017","issue":null,"first_page":"1300","last_page":"1303"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9082000255584717,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7115342617034912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6703628301620483},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.47348272800445557},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.42885977029800415},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35804152488708496},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32533925771713257},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32515573501586914},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1479821503162384}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7115342617034912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6703628301620483},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.47348272800445557},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.42885977029800415},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35804152488708496},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32533925771713257},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32515573501586914},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1479821503162384},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm.2017.8217849","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217849","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmid:29707415","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29707415","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":null},{"id":"pmh:oai:europepmc.org:4842276","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5918275","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309360","display_name":"Florida Department of Health","ror":"https://ror.org/03e1xkn26"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1620530708","https://openalex.org/W2299775049","https://openalex.org/W2520002620","https://openalex.org/W2611454316","https://openalex.org/W6636433603","https://openalex.org/W7061776695"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2126703991","https://openalex.org/W2610897791","https://openalex.org/W3153302240"],"abstract_inverted_index":{"To":[0],"improve":[1,14],"cancer":[2,22,29,44,141],"survival":[3,30,45,142],"rates":[4],"and":[5,80,103,124],"prognosis,":[6],"one":[7],"of":[8,17,40,43,99,112,131,135,138],"the":[9,129,133,136],"first":[10],"steps":[11],"is":[12,31,65],"to":[13,86],"our":[15],"understanding":[16],"contributory":[18],"factors":[19,35,127],"associated":[20],"with":[21,140],"survival.":[23],"Prior":[24],"research":[25],"has":[26],"suggested":[27],"that":[28,93,120],"influenced":[32],"by":[33],"multiple":[34,37],"from":[36,48,60,71],"levels.":[38],"Most":[39],"existing":[41],"analyses":[42],"used":[46],"data":[47,70,90,102,114,118],"a":[49,66,88,95,109],"single":[50],"source.":[51],"Nevertheless,":[52],"there":[53],"are":[54],"key":[55],"challenges":[56],"in":[57,77],"integrating":[58],"variables":[59],"different":[61,72],"sources.":[62],"Data":[63],"integration":[64,91,115],"daunting":[67],"task":[68],"because":[69],"sources":[73],"can":[74],"be":[75],"heterogeneous":[76],"syntax,":[78],"schema,":[79],"particularly":[81],"semantics.":[82],"Thus,":[83],"we":[84],"propose":[85],"adopt":[87],"semantic":[89,113],"approach":[92],"generates":[94],"universal":[96],"conceptual":[97],"representation":[98],"\"information\"":[100],"including":[101],"their":[104],"relationships.":[105],"This":[106],"paper":[107],"describes":[108],"case":[110],"study":[111],"linking":[116],"three":[117],"sets":[119],"cover":[121],"both":[122],"individual":[123],"contextual":[125],"level":[126],"for":[128],"purpose":[130],"assessing":[132],"association":[134],"predictors":[137],"interest":[139],"using":[143],"cox":[144],"proportional":[145],"hazard":[146],"models.":[147]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
