{"id":"https://openalex.org/W2774044277","doi":"https://doi.org/10.1109/bibm.2017.8217845","title":"OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base","display_name":"OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2774044277","doi":"https://doi.org/10.1109/bibm.2017.8217845","mag":"2774044277","pmid":"https://pubmed.ncbi.nlm.nih.gov/29629236"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217845","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217845","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079554685","display_name":"Juan Antonio Lossio-Ventura","orcid":"https://orcid.org/0000-0003-0996-2356"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juan Antonio Lossio-Ventura","raw_affiliation_strings":["Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076610873","display_name":"William R. Hogan","orcid":"https://orcid.org/0000-0002-9881-1017"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Hogan","raw_affiliation_strings":["Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049702218","display_name":"Fran\u00e7ois Modave","orcid":"https://orcid.org/0000-0003-4366-0757"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francois Modave","raw_affiliation_strings":["Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052505769","display_name":"Yi Guo","orcid":"https://orcid.org/0000-0003-0587-4105"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Guo","raw_affiliation_strings":["Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047567293","display_name":"Zhe He","orcid":"https://orcid.org/0000-0003-3608-0244"},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhe He","raw_affiliation_strings":["School of Information, Florida State University, Tallahassee, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information, Florida State University, Tallahassee, Florida, USA","institution_ids":["https://openalex.org/I103163165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083035733","display_name":"Amanda Hicks","orcid":"https://orcid.org/0000-0002-3496-1745"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amanda Hicks","raw_affiliation_strings":["Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030951014","display_name":"Jiang Bian","orcid":"https://orcid.org/0000-0002-2238-5429"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiang Bian","raw_affiliation_strings":["Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Outcomes & Policy, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.5942,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.92750033,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2017","issue":null,"first_page":"1284","last_page":"1287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6518844366073608},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.6348329782485962},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5500308275222778},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.467575341463089},{"id":"https://openalex.org/keywords/obesity","display_name":"Obesity","score":0.46412208676338196},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.44885703921318054},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4296149015426636},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4275619685649872},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.42662763595581055},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3894481062889099},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.352772057056427},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35162755846977234},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.273776113986969},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24560025334358215},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08941009640693665}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6518844366073608},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.6348329782485962},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5500308275222778},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.467575341463089},{"id":"https://openalex.org/C511355011","wikidata":"https://www.wikidata.org/wiki/Q12174","display_name":"Obesity","level":2,"score":0.46412208676338196},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.44885703921318054},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4296149015426636},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4275619685649872},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.42662763595581055},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3894481062889099},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.352772057056427},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35162755846977234},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.273776113986969},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24560025334358215},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08941009640693665},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/bibm.2017.8217845","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217845","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmid:29629236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29629236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":null},{"id":"pmh:oai:europepmc.org:4796245","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5889048","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:diginole.lib.fsu.edu:fsu_692751","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401638","display_name":"DigiNole (Florida State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I103163165","host_organization_name":"Florida State University","host_organization_lineage":["https://openalex.org/I103163165"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1804605604","display_name":null,"funder_award_id":"K24AR075060","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G3345260134","display_name":null,"funder_award_id":"UL1-TR001427","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W33042637","https://openalex.org/W309944753","https://openalex.org/W1908119927","https://openalex.org/W2113142309","https://openalex.org/W2114913305","https://openalex.org/W2117446654","https://openalex.org/W2117993232","https://openalex.org/W2126877871","https://openalex.org/W2173884055","https://openalex.org/W2515658387","https://openalex.org/W2576606657"],"related_works":["https://openalex.org/W2385621242","https://openalex.org/W2357854711","https://openalex.org/W2382915105","https://openalex.org/W2367629516","https://openalex.org/W2086580554","https://openalex.org/W2553860513","https://openalex.org/W4243448361","https://openalex.org/W1986001501","https://openalex.org/W2353740909","https://openalex.org/W1520100787"],"abstract_inverted_index":{"Obesity":[0],"has":[1,125],"been":[2],"linked":[3],"to":[4,10,67,71,93,101],"several":[5,61],"types":[6],"of":[7,133,140,179],"cancer.":[8],"Access":[9],"adequate":[11],"health":[12,26,56],"information":[13,32],"activates":[14],"people's":[15],"participation":[16],"in":[17,63,77,120],"managing":[18,108],"their":[19,25],"own":[20],"health,":[21],"which":[22,129],"ultimately":[23],"improves":[24],"outcomes.":[27],"Nevertheless,":[28],"the":[29,34,64,103,131,136,147],"existing":[30],"online":[31],"about":[33],"relationship":[35],"between":[36],"obesity":[37,109,158],"and":[38,42,53,74,91,110,135,159,163,181],"cancer":[39,111,160],"is":[40,99],"heterogeneous":[41],"poorly":[43],"organized.":[44],"A":[45],"formal":[46],"knowledge":[47,80,112],"representation":[48],"can":[49],"help":[50],"better":[51],"organize":[52],"deliver":[54],"quality":[55],"information.":[57],"Currently,":[58],"there":[59],"are":[60],"efforts":[62],"biomedical":[65],"domain":[66],"convert":[68],"unstructured":[69],"data":[70,73,152],"structured":[72],"store":[75],"them":[76],"Semantic":[78],"Web":[79],"bases":[81],"(KB).":[82],"In":[83],"this":[84,177],"demo":[85],"paper,":[86],"we":[87],"present,":[88],"OC-2-KB":[89,124,148],"(Obesity":[90],"Cancer":[92],"Knowledge":[94],"Base),":[95],"a":[96,121,151,165,173],"system":[97,149],"that":[98],"tailored":[100],"guide":[102],"automatic":[104],"KB":[105,167],"construction":[106],"for":[107],"from":[113],"free-text":[114],"scientific":[115],"literature":[116],"(i.e.,":[117],"PubMed":[118,161],"abstracts)":[119],"systematic":[122],"way.":[123],"two":[126],"important":[127],"modules":[128],"perform":[130],"acquisition":[132],"entities":[134],"extraction":[137],"then":[138],"classification":[139],"relationships":[141],"among":[142],"these":[143],"entities.":[144],"We":[145,171],"tested":[146],"on":[150,176],"set":[153],"with":[154,168],"23":[155],"manually":[156],"annotated":[157],"abstracts":[162],"created":[164],"preliminary":[166,174],"765":[169],"triples.":[170],"conducted":[172],"evaluation":[175,184],"sample":[178],"triples":[180],"reported":[182],"our":[183],"results.":[185]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}