{"id":"https://openalex.org/W2771616701","doi":"https://doi.org/10.1109/bibm.2017.8217691","title":"An interactive workflow generator to support bioinformatics analysis through GPU acceleration","display_name":"An interactive workflow generator to support bioinformatics analysis through GPU acceleration","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2771616701","doi":"https://doi.org/10.1109/bibm.2017.8217691","mag":"2771616701"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217691","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217691","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103216948","display_name":"Anuradha Welivita","orcid":"https://orcid.org/0000-0003-0181-8675"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Anuradha Welivita","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008036750","display_name":"Indika Perera","orcid":"https://orcid.org/0000-0001-5660-248X"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Indika Perera","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020197064","display_name":"Dulani Meedeniya","orcid":"https://orcid.org/0000-0002-4520-3819"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Dulani Meedeniya","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I195740183"],"apc_list":null,"apc_paid":null,"fwci":4.474,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.94759825,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"457","last_page":"462"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8193341493606567},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.809748649597168},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.6934190392494202},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.688054084777832},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.5851684808731079},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5012562274932861},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.43492811918258667},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.4337676167488098},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.4284907579421997},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4103242754936218},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.40516531467437744},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3860529959201813},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.33798450231552124},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25059908628463745},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.24298155307769775}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8193341493606567},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.809748649597168},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.6934190392494202},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.688054084777832},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.5851684808731079},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5012562274932861},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.43492811918258667},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.4337676167488098},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.4284907579421997},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4103242754936218},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.40516531467437744},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3860529959201813},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.33798450231552124},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25059908628463745},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.24298155307769775},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2017.8217691","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217691","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1996925142","https://openalex.org/W2013434113","https://openalex.org/W2055043387","https://openalex.org/W2084078215","https://openalex.org/W2110417468","https://openalex.org/W2114850508","https://openalex.org/W2136482257","https://openalex.org/W2139426737","https://openalex.org/W2160697532","https://openalex.org/W2168103533","https://openalex.org/W2169594074","https://openalex.org/W2273887230","https://openalex.org/W2308670510","https://openalex.org/W2310259903","https://openalex.org/W2464597840","https://openalex.org/W4229608894","https://openalex.org/W4251097584","https://openalex.org/W6698195056","https://openalex.org/W6719336977"],"related_works":["https://openalex.org/W2391168633","https://openalex.org/W2385499106","https://openalex.org/W2035995658","https://openalex.org/W2376671203","https://openalex.org/W2375304607","https://openalex.org/W2049143847","https://openalex.org/W1574425962","https://openalex.org/W2354357087","https://openalex.org/W2353477037","https://openalex.org/W2387628393"],"abstract_inverted_index":{"Next":[0],"Generation":[1],"Sequencing":[2],"has":[3,15,70],"introduced":[4],"novel":[5,107],"means":[6],"of":[7,10,23,54,63,66,80,114,122,142],"sequencing":[8],"millions":[9],"DNA":[11],"molecules":[12],"simultaneously":[13],"and":[14,43,56],"opened":[16],"up":[17],"new":[18],"avenues":[19],"in":[20,40],"the":[21,52,61,130,148],"field":[22],"bioinformatics":[24,38,93,115],"that":[25],"requires":[26],"high":[27],"performance":[28],"computing":[29,103],"technologies.":[30],"Bioinformatics":[31],"pipelines":[32,55],"are":[33,48],"constructed":[34],"to":[35,50,73,91,110],"carry":[36],"out":[37],"analyses":[39,99],"a":[41,77,85,120,125,136],"fast":[42],"efficient":[44],"manner.":[45],"Workflow":[46],"systems":[47],"developed":[49],"simplify":[51],"construction":[53],"automate":[57],"analyses.":[58],"Still,":[59],"with":[60],"availability":[62],"large":[64],"amounts":[65],"sequence":[67],"data,":[68],"it":[69],"become":[71],"challenging":[72],"have":[74],"results":[75,118],"within":[76],"reasonable":[78],"amount":[79],"time.":[81],"The":[82,95,117],"research":[83],"proposes":[84],"GPU":[86,102,131],"accelerated":[87,132],"generic":[88],"software":[89],"system":[90,96,133],"construct":[92],"workflows.":[94],"allows":[97],"performing":[98],"through":[100],"dedicated":[101],"resources,":[104],"while":[105],"incorporating":[106],"web":[108],"technologies":[109],"support":[111],"specific":[112],"requirements":[113],"software.":[116],"indicate":[119],"speedup":[121],"\u00d73.11":[123],"when":[124],"workflow":[126],"is":[127],"run":[128],"on":[129,135],"than":[134],"CPU.":[137],"System":[138],"usability":[139,146],"scale":[140],"score":[141],"77.5":[143],"suggests":[144],"good":[145],"for":[147],"system.":[149]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
