{"id":"https://openalex.org/W2771920838","doi":"https://doi.org/10.1109/bibm.2017.8217673","title":"Signature-based clustering for analysis of the wound microbiome","display_name":"Signature-based clustering for analysis of the wound microbiome","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2771920838","doi":"https://doi.org/10.1109/bibm.2017.8217673","mag":"2771920838"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217673","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217673","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013498459","display_name":"Timothy Chappell","orcid":"https://orcid.org/0000-0002-8862-7048"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Timothy Chappell","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045420626","display_name":"Shlomo Geva","orcid":"https://orcid.org/0000-0003-1340-2802"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Shlomo Geva","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110256734","display_name":"James M. Hogan","orcid":null},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James M. Hogan","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047286084","display_name":"Flavia Huygens","orcid":"https://orcid.org/0000-0002-2737-2264"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Flavia Huygens","raw_affiliation_strings":["Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033258629","display_name":"Wayne Kelly","orcid":"https://orcid.org/0000-0002-8554-4589"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Wayne Kelly","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089156481","display_name":"Dimitri Perrin","orcid":"https://orcid.org/0000-0002-4007-5256"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dimitri Perrin","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I160993911"],"apc_list":null,"apc_paid":null,"fwci":0.5257,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.64801865,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":null,"first_page":"339","last_page":"346"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10771","display_name":"Wound Healing and Treatments","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2742","display_name":"Rehabilitation"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10771","display_name":"Wound Healing and Treatments","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2742","display_name":"Rehabilitation"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9361000061035156,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6174135208129883},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5993470549583435},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.562757134437561},{"id":"https://openalex.org/keywords/chronic-wound","display_name":"Chronic wound","score":0.5589531660079956},{"id":"https://openalex.org/keywords/wound-care","display_name":"Wound care","score":0.5187766551971436},{"id":"https://openalex.org/keywords/wound-healing","display_name":"Wound healing","score":0.44852086901664734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44033530354499817},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3750097155570984},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3289899230003357},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3243004083633423},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3220675587654114},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2895147204399109},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24168351292610168},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.22086450457572937},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.19104143977165222}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6174135208129883},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5993470549583435},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.562757134437561},{"id":"https://openalex.org/C2781051411","wikidata":"https://www.wikidata.org/wiki/Q2078852","display_name":"Chronic wound","level":3,"score":0.5589531660079956},{"id":"https://openalex.org/C2993807428","wikidata":"https://www.wikidata.org/wiki/Q25324087","display_name":"Wound care","level":2,"score":0.5187766551971436},{"id":"https://openalex.org/C2780269544","wikidata":"https://www.wikidata.org/wiki/Q1509074","display_name":"Wound healing","level":2,"score":0.44852086901664734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44033530354499817},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3750097155570984},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3289899230003357},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3243004083633423},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3220675587654114},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2895147204399109},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24168351292610168},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.22086450457572937},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.19104143977165222},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2017.8217673","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217673","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.qut.edu.au:115911","is_oa":false,"landing_page_url":"https://eprints.qut.edu.au/115911/1/BIBM_CameraReady_v2.pdf","pdf_url":"https://eprints.qut.edu.au/115911/1/BIBM_CameraReady_v2.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"Chapter in Book, Report or Conference volume"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W40781151","https://openalex.org/W188912188","https://openalex.org/W1882424553","https://openalex.org/W1986560085","https://openalex.org/W1986908904","https://openalex.org/W1998739300","https://openalex.org/W1998995307","https://openalex.org/W2013445830","https://openalex.org/W2017529960","https://openalex.org/W2030340067","https://openalex.org/W2055043387","https://openalex.org/W2065347041","https://openalex.org/W2070261938","https://openalex.org/W2073810410","https://openalex.org/W2074129003","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2089310071","https://openalex.org/W2096565388","https://openalex.org/W2106849856","https://openalex.org/W2108281900","https://openalex.org/W2108703442","https://openalex.org/W2109064484","https://openalex.org/W2118001436","https://openalex.org/W2122467784","https://openalex.org/W2124351063","https://openalex.org/W2127218421","https://openalex.org/W2144305368","https://openalex.org/W2147618390","https://openalex.org/W2160017126","https://openalex.org/W2162873750","https://openalex.org/W2621923054","https://openalex.org/W2949965161","https://openalex.org/W3002572777","https://openalex.org/W3174993126","https://openalex.org/W4236236547","https://openalex.org/W6607608502","https://openalex.org/W6678914141","https://openalex.org/W6739365183","https://openalex.org/W6797317855"],"related_works":["https://openalex.org/W2023272325","https://openalex.org/W4211199189","https://openalex.org/W156957722","https://openalex.org/W4360997928","https://openalex.org/W2401572185","https://openalex.org/W1986571558","https://openalex.org/W2091934549","https://openalex.org/W1971142768","https://openalex.org/W2076109787","https://openalex.org/W2607124069"],"abstract_inverted_index":{"Chronic":[0],"wounds":[1,157],"present":[2],"a":[3,10,83,124,134,178,184,208,215],"significant":[4],"risk":[5],"to":[6,20,36,159,168,170,174],"the":[7,17,66,120,141,201,212],"patient":[8,129],"and":[9,72,100,156,221,223,230],"substantial":[11],"drain":[12],"on":[13,74,88,123,139,207],"health":[14],"budgets,":[15],"with":[16,23],"problem":[18],"likely":[19],"worsen":[21],"markedly":[22],"increased":[24],"incidence":[25],"of":[26,68,102,112,127,151,180,186,188,200,214],"type":[27],"II":[28],"diabetes.":[29],"The":[30,191],"wound":[31,38,53,121,146,154,181,202,219,228],"fluid":[32],"microbiome":[33,203],"is":[34,42],"known":[35,173],"influence":[37],"healing":[39,155],"outcomes,":[40,182],"but":[41,55],"poorly":[43],"characterised.":[44],"Next":[45],"Generation":[46],"Sequencing":[47],"approaches":[48],"yield":[49],"abundant":[50],"data":[51,105],"from":[52,92,110],"samples,":[54],"progress":[56],"in":[57,106,119,163],"understanding":[58,199],"these":[59,164],"microbial":[60],"communities":[61],"may":[62],"be":[63,175],"hampered":[64],"by":[65,76],"speed":[67],"existing":[69],"analysis":[70,137,220],"pipelines":[71],"limitations":[73],"coverage":[75],"16S":[77],"databases.":[78],"This":[79],"paper":[80],"presents":[81],"SigClust,":[82],"novel":[84,225],"clustering":[85],"method":[86],"based":[87,138],"binary":[89],"signatures":[90],"derived":[91],"sequence":[93],"reads.":[94],"SigClust":[95,196],"yields":[96],"superior":[97],"cluster":[98],"coherence":[99],"separation":[101],"metagenomic":[103],"read":[104],"timeframes":[107],"substantially":[108],"reduced":[109],"those":[111],"alternative":[113],"methods.":[114],"We":[115,131],"demonstrate":[116],"its":[117],"utility":[118],"context":[122],"preliminary":[125],"set":[126],"labelled":[128],"data.":[130],"show":[132],"how":[133],"time":[135],"course":[136],"tracking":[140],"dominant":[142],"clusters":[143,192],"over":[144],"successive":[145],"samples":[147],"can":[148],"identify":[149],"markers":[150],"both":[152],"successful":[153],"refractory":[158],"treatment.":[160],"Clusters":[161],"prominent":[162],"analyses":[165],"are":[166],"found":[167],"correspond":[169],"bacterial":[171],"species":[172],"implicated":[176],"as":[177],"determinant":[179],"notably":[183],"number":[185],"strains":[187],"Staphylococcus":[189],"aureus.":[190],"obtained":[193],"rapidly":[194],"via":[195],"support":[197],"improved":[198],"without":[204],"direct":[205],"reliance":[206],"reference":[209],"database,":[210],"offering":[211],"promise":[213],"SigClust-based":[216],"pipeline":[217],"for":[218,227],"prediction,":[222],"potentially":[224],"methods":[226],"treatment":[229],"management.":[231]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
