{"id":"https://openalex.org/W2772738309","doi":"https://doi.org/10.1109/bibm.2017.8217660","title":"Pre-SCNAClonal: Efficient GC bias correction for SCNA based tumor subclonal populations inferring","display_name":"Pre-SCNAClonal: Efficient GC bias correction for SCNA based tumor subclonal populations inferring","publication_year":2017,"publication_date":"2017-11-01","ids":{"openalex":"https://openalex.org/W2772738309","doi":"https://doi.org/10.1109/bibm.2017.8217660","mag":"2772738309"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2017.8217660","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217660","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084027077","display_name":"Yanshuo Chu","orcid":"https://orcid.org/0000-0002-4188-782X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanshuo Chu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049382437","display_name":"Mingxiang Teng","orcid":"https://orcid.org/0000-0002-8536-8941"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingxiang Teng","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058599864","display_name":"Zhenxing Wang","orcid":"https://orcid.org/0000-0001-7020-5202"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenxing Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101577163","display_name":"Yongtian Wang","orcid":"https://orcid.org/0000-0003-2766-3106"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongtian Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"262","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10231","display_name":"Pancreatic and Hepatic Oncology Research","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5453192591667175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.466264545917511},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45312973856925964},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.4268152117729187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3208778500556946},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.266776442527771},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1511611044406891},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12261337041854858}],"concepts":[{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5453192591667175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.466264545917511},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45312973856925964},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.4268152117729187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3208778500556946},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.266776442527771},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1511611044406891},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12261337041854858},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2017.8217660","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2017.8217660","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1822306804","https://openalex.org/W1967304777","https://openalex.org/W2018604728","https://openalex.org/W2025183726","https://openalex.org/W2083886963","https://openalex.org/W2104817809","https://openalex.org/W2112706474","https://openalex.org/W2127214385","https://openalex.org/W2133980123","https://openalex.org/W2143922456","https://openalex.org/W2153056550","https://openalex.org/W2164844813","https://openalex.org/W2614701255","https://openalex.org/W2776531206","https://openalex.org/W4240700790"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W1641042124","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802"],"abstract_inverted_index":{"Somatic":[0],"copy":[1],"number":[2],"alternations":[3],"(SCNAs)":[4],"can":[5],"be":[6,111],"utilized":[7],"to":[8],"infer":[9],"tumor":[10,78,104],"subclonal":[11,59,79,105,118],"populations":[12,80],"in":[13,36],"whole":[14],"genome":[15],"seuqncing":[16],"studies,":[17],"where":[18],"usually":[19],"their":[20],"read":[21,44],"count":[22,45],"ratios":[23,46],"between":[24],"tumor-normal":[25],"paired":[26],"samples":[27],"serve":[28],"as":[29,122,128],"the":[30,40,93,98,101,115],"inferring":[31,60,77,107,120],"proxy.":[32],"We":[33,67],"found":[34],"that,":[35],"a":[37,51,70,123],"GC":[38,41,72,94],"study,":[39],"contents":[42],"and":[43,90,96],"on":[47,82],"SCNA":[48],"segments":[49],"present":[50],"Log":[52],"linear":[53],"biased":[54],"pattern.":[55],"However,":[56],"currently":[57],"no":[58],"tools":[61],"take":[62],"into":[63],"account":[64],"this":[65],"information.":[66],"provide":[68],"Pre-SCNAClonal,":[69],"comprehensive":[71],"bias":[73,95],"correction":[74],"tool":[75,121],"for":[76],"based":[81,103,117],"SCNAs.":[83],"Results":[84],"show":[85],"that":[86],"Pre-SCNAClonal":[87,109],"could":[88,110],"effectively":[89],"robustly":[91],"correct":[92],"improve":[97],"performance":[99],"of":[100],"SCNAs":[102,116],"population":[106,119],"tools.":[108],"strung":[112],"together":[113],"with":[114],"pipeline":[124],"or":[125],"run":[126],"individually":[127],"needed.":[129]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
