{"id":"https://openalex.org/W2574090779","doi":"https://doi.org/10.1109/bibm.2016.7822795","title":"Sparse singular value decomposition-based feature extraction for identifying differentially expressed genes","display_name":"Sparse singular value decomposition-based feature extraction for identifying differentially expressed genes","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2574090779","doi":"https://doi.org/10.1109/bibm.2016.7822795","mag":"2574090779"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822795","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822795","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102801556","display_name":"Xiang-Zhen Kong","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang-Zhen Kong","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007539735","display_name":"Junliang Shang","orcid":"https://orcid.org/0000-0002-8488-2228"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun-Liang Shang","raw_affiliation_strings":["School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103705559","display_name":"Wei Zhang","orcid":"https://orcid.org/0009-0007-6425-0374"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Biomedical Research Institute, Hongkong University of Science and Technology Medical Center, Shenzhen, Guangdong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Research Institute, Hongkong University of Science and Technology Medical Center, Shenzhen, Guangdong, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7021,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88708232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"10","issue":null,"first_page":"1822","last_page":"1827"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.8557804226875305},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.6908846497535706},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6691470146179199},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.6087937355041504},{"id":"https://openalex.org/keywords/singular-value-decomposition","display_name":"Singular value decomposition","score":0.6046232581138611},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.5009133815765381},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.492818146944046},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.48761382699012756},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46526527404785156},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.46087366342544556},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.4407532215118408},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43981313705444336},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42149603366851807},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4003136157989502},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.362759530544281},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.28129687905311584},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2482183277606964},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.196659654378891},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09174221754074097}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.8557804226875305},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.6908846497535706},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6691470146179199},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.6087937355041504},{"id":"https://openalex.org/C22789450","wikidata":"https://www.wikidata.org/wiki/Q420904","display_name":"Singular value decomposition","level":2,"score":0.6046232581138611},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.5009133815765381},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.492818146944046},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.48761382699012756},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46526527404785156},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.46087366342544556},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.4407532215118408},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43981313705444336},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42149603366851807},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4003136157989502},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.362759530544281},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.28129687905311584},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2482183277606964},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.196659654378891},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09174221754074097},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2016.7822795","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822795","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-83816","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-83816","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320316326","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1014065910","https://openalex.org/W1977294235","https://openalex.org/W1982620898","https://openalex.org/W1992918752","https://openalex.org/W1995691260","https://openalex.org/W2004026774","https://openalex.org/W2005957699","https://openalex.org/W2020925091","https://openalex.org/W2075231115","https://openalex.org/W2097417531","https://openalex.org/W2119634636","https://openalex.org/W2124649657","https://openalex.org/W2131838954","https://openalex.org/W2133178176","https://openalex.org/W2145955247","https://openalex.org/W2147339185","https://openalex.org/W2148499186","https://openalex.org/W2148861142","https://openalex.org/W2155804510","https://openalex.org/W2159482845","https://openalex.org/W2166574880","https://openalex.org/W2168175751","https://openalex.org/W2297993206","https://openalex.org/W2912724961","https://openalex.org/W3014542904","https://openalex.org/W6674797195"],"related_works":["https://openalex.org/W2348562996","https://openalex.org/W1995622179","https://openalex.org/W1552543208","https://openalex.org/W2074396517","https://openalex.org/W2166963679","https://openalex.org/W2187269125","https://openalex.org/W1641615907","https://openalex.org/W3089231081","https://openalex.org/W2093956241","https://openalex.org/W2354420595"],"abstract_inverted_index":{"Recently,":[0],"feature":[1,29,102,113,156],"extraction":[2,30,93,103,114],"and":[3,64,79,84,115],"dimensionality":[4],"reduction":[5],"have":[6],"become":[7],"fundamental":[8],"tools":[9,73],"for":[10,16,178],"many":[11],"data":[12,19],"mining":[13],"tasks,":[14],"especially":[15],"processing":[17],"high-dimensional":[18],"such":[20,105],"as":[21,106],"genome":[22,53],"data.":[23],"In":[24],"this":[25],"paper,":[26],"a":[27,91,170],"new":[28],"method":[31,128,158],"based":[32,74],"on":[33,75],"sparse":[34,116],"singular":[35],"value":[36],"decomposition":[37],"(SSVD)":[38],"is":[39,43,96,153],"developed.":[40],"SSVD":[41,95,127,152],"algorithm":[42],"applied":[44],"to":[45,173],"extract":[46],"differentially":[47],"expressed":[48],"genes":[49,68,139],"from":[50,58],"two":[51],"different":[52],"datasets":[54],"that":[55,126,151],"are":[56,69],"all":[57],"The":[59,120,133,147,164],"Cancer":[60],"Genome":[61],"Atlas":[62],"(TCGA),":[63],"then":[65],"the":[66,72,110,130,138,143,161,181],"extracted":[67],"evaluated":[70],"by":[71],"Gene":[76],"Ontology":[77],"(GO)":[78],"Kyoto":[80],"Encyclopedia":[81],"of":[82,183],"Genes":[83],"Genomes":[85],"(KEGG)":[86],"pathway":[87],"enrichment":[88],"analysis.":[89,119],"As":[90],"gene":[92],"method,":[94],"also":[97],"compared":[98,159],"with":[99,160],"some":[100],"existing":[101],"methods":[104],"independent":[107],"component":[108,118],"analysis,":[109],"p-norm":[111],"robust":[112],"principal":[117],"experimental":[121],"GO":[122],"analysis":[123,135,166],"results":[124,136,167],"show":[125],"outperforms":[129],"competitive":[131,162],"algorithms.":[132],"KEGG":[134,165],"demonstrate":[137],"which":[140],"participate":[141],"in":[142,145,180],"pathways":[144],"cancer.":[146],"elaborate":[148],"experiments":[149],"prove":[150],"an":[154],"effective":[155],"selection":[157],"methods.":[163],"may":[168],"provide":[169],"meaningful":[171],"reference":[172],"carry":[174],"out":[175],"further":[176],"study":[177],"professionals":[179],"field":[182],"biomedical":[184],"science.":[185]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
