{"id":"https://openalex.org/W2575669453","doi":"https://doi.org/10.1109/bibm.2016.7822680","title":"IMDBfs: Bridging the gap between in-memory database technology and file-based tools for life sciences","display_name":"IMDBfs: Bridging the gap between in-memory database technology and file-based tools for life sciences","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2575669453","doi":"https://doi.org/10.1109/bibm.2016.7822680","mag":"2575669453"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822680","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822680","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053012847","display_name":"Matthieu-P. Schapranow","orcid":"https://orcid.org/0000-0001-6601-2942"},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthieu-P. Schapranow","raw_affiliation_strings":["Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany","institution_ids":["https://openalex.org/I143288331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012668412","display_name":"Milena Kraus","orcid":"https://orcid.org/0000-0002-4472-0427"},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Milena Kraus","raw_affiliation_strings":["Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany","institution_ids":["https://openalex.org/I143288331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027221310","display_name":"Marius Danner","orcid":null},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marius Danner","raw_affiliation_strings":["Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany","institution_ids":["https://openalex.org/I143288331"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035480309","display_name":"Hasso Plattner","orcid":null},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hasso Plattner","raw_affiliation_strings":["Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hasso Plattner Institute, Enterprise Platform and Integration Concepts, Potsdam, Germany","institution_ids":["https://openalex.org/I143288331"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I143288331"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"1","issue":null,"first_page":"1133","last_page":"1139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8095676898956299},{"id":"https://openalex.org/keywords/flat-file-database","display_name":"Flat file database","score":0.6881758570671082},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.6638896465301514},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6471495032310486},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6342101693153381},{"id":"https://openalex.org/keywords/porting","display_name":"Porting","score":0.6014312505722046},{"id":"https://openalex.org/keywords/file-system","display_name":"File system","score":0.5362839698791504},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4661005735397339},{"id":"https://openalex.org/keywords/computer-file","display_name":"Computer file","score":0.3413635492324829},{"id":"https://openalex.org/keywords/journaling-file-system","display_name":"Journaling file system","score":0.20724418759346008},{"id":"https://openalex.org/keywords/versioning-file-system","display_name":"Versioning file system","score":0.1146845817565918},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.09855037927627563}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8095676898956299},{"id":"https://openalex.org/C201743585","wikidata":"https://www.wikidata.org/wiki/Q1373925","display_name":"Flat file database","level":5,"score":0.6881758570671082},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.6638896465301514},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6471495032310486},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6342101693153381},{"id":"https://openalex.org/C106251023","wikidata":"https://www.wikidata.org/wiki/Q851989","display_name":"Porting","level":3,"score":0.6014312505722046},{"id":"https://openalex.org/C2780940931","wikidata":"https://www.wikidata.org/wiki/Q174989","display_name":"File system","level":2,"score":0.5362839698791504},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4661005735397339},{"id":"https://openalex.org/C95637964","wikidata":"https://www.wikidata.org/wiki/Q82753","display_name":"Computer file","level":2,"score":0.3413635492324829},{"id":"https://openalex.org/C2225880","wikidata":"https://www.wikidata.org/wiki/Q579047","display_name":"Journaling file system","level":3,"score":0.20724418759346008},{"id":"https://openalex.org/C166807848","wikidata":"https://www.wikidata.org/wiki/Q3445065","display_name":"Versioning file system","level":4,"score":0.1146845817565918},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.09855037927627563},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2016.7822680","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822680","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W11774449","https://openalex.org/W204909595","https://openalex.org/W220935706","https://openalex.org/W1538436587","https://openalex.org/W1542475411","https://openalex.org/W1916709771","https://openalex.org/W2066047071","https://openalex.org/W2103441770","https://openalex.org/W2117608012","https://openalex.org/W2138196010","https://openalex.org/W2172173047","https://openalex.org/W2235007410","https://openalex.org/W2273527300","https://openalex.org/W2735335013","https://openalex.org/W2979987406","https://openalex.org/W3128608526","https://openalex.org/W3200788958","https://openalex.org/W4245691343","https://openalex.org/W4299508300","https://openalex.org/W6741070640","https://openalex.org/W6769229708"],"related_works":["https://openalex.org/W2097829252","https://openalex.org/W2492950534","https://openalex.org/W4247882433","https://openalex.org/W16262860","https://openalex.org/W2361508424","https://openalex.org/W196652493","https://openalex.org/W2919860277","https://openalex.org/W1482786207","https://openalex.org/W2382233744","https://openalex.org/W2534321015"],"abstract_inverted_index":{"Many":[0],"established":[1],"processing":[2],"and":[3,28],"analysis":[4],"tools":[5,76,88],"in":[6],"life":[7,74],"sciences":[8],"are":[9],"still":[10],"operating":[11,43],"on":[12,44],"files,":[13],"e.g.":[14],"alignment":[15],"of":[16,30,46,72],"genome":[17],"data.":[18,31],"Their":[19],"integration":[20,71],"into":[21,77],"optimized":[22,79],"workflows":[23],"requires":[24],"time-consuming":[25],"transformation,":[26],"import":[27],"export":[29],"In":[32],"the":[33,65],"given":[34],"contribution,":[35],"we":[36],"introduce":[37],"IMDBfs:":[38],"a":[39,85],"shared":[40],"file":[41,61],"system":[42,62],"top":[45],"an":[47],"in-memory":[48],"database":[49,57],"system.":[50],"Our":[51],"IMDBfs":[52],"provides":[53],"transparent":[54,97],"access":[55,100],"to":[56,91],"resources":[58],"via":[59],"traditional":[60],"operations.":[63],"For":[64],"first":[66],"time,":[67],"it":[68],"allows":[69],"seamless":[70],"file-based":[73],"science":[75],"processes":[78],"for":[80],"latest":[81],"IMDB":[82,98],"technology.":[83],"As":[84],"result,":[86],"existing":[87],"neither":[89],"need":[90],"be":[92],"ported":[93],"nor":[94],"modified":[95],"whilst":[96],"data":[99],"is":[101],"provided.":[102]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
