{"id":"https://openalex.org/W2572809958","doi":"https://doi.org/10.1109/bibm.2016.7822668","title":"Classification of use status for dietary supplements in clinical notes","display_name":"Classification of use status for dietary supplements in clinical notes","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2572809958","doi":"https://doi.org/10.1109/bibm.2016.7822668","mag":"2572809958","pmid":"https://pubmed.ncbi.nlm.nih.gov/28824824"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822668","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822668","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5562281","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062761294","display_name":"Yadan Fan","orcid":"https://orcid.org/0000-0002-7797-815X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yadan Fan","raw_affiliation_strings":["Institute for Health Informatics, University of Minnesota, Minneapolis, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Health Informatics, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056691990","display_name":"He Lu","orcid":"https://orcid.org/0000-0001-6501-5447"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lu He","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100422019","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0002-2559-6686"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Institute for Health Informatics, Department of Surgery, University of Minnesota, Minneapolis, MN, USA","Department of Surgery University of Minnesota, Institute for Health Informatics, Minneapolis, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Health Informatics, Department of Surgery, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Department of Surgery University of Minnesota, Institute for Health Informatics, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":null,"apc_paid":null,"fwci":10.2295,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.97593261,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2016","issue":null,"first_page":"1054","last_page":"1061"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10902","display_name":"Complementary and Alternative Medicine Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10902","display_name":"Complementary and Alternative Medicine Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13238","display_name":"Botanical Studies and Applications","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dietary-supplement","display_name":"Dietary supplement","score":0.7612107992172241},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.5221236348152161},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.516455888748169},{"id":"https://openalex.org/keywords/traditional-medicine","display_name":"Traditional medicine","score":0.4029444754123688},{"id":"https://openalex.org/keywords/food-science","display_name":"Food science","score":0.1668248474597931},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14710447192192078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1185251772403717}],"concepts":[{"id":"https://openalex.org/C3018363719","wikidata":"https://www.wikidata.org/wiki/Q645858","display_name":"Dietary supplement","level":2,"score":0.7612107992172241},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.5221236348152161},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.516455888748169},{"id":"https://openalex.org/C556039675","wikidata":"https://www.wikidata.org/wiki/Q771035","display_name":"Traditional medicine","level":1,"score":0.4029444754123688},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.1668248474597931},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14710447192192078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1185251772403717},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm.2016.7822668","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822668","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmid:28824824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28824824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5562281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5562281","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:5562281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5562281","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3134520348","display_name":null,"funder_award_id":"UL1 TR-000114","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W24170292","https://openalex.org/W198899553","https://openalex.org/W1550258693","https://openalex.org/W1794469725","https://openalex.org/W1957686931","https://openalex.org/W2006403603","https://openalex.org/W2011119572","https://openalex.org/W2012226794","https://openalex.org/W2029856451","https://openalex.org/W2061940940","https://openalex.org/W2074299694","https://openalex.org/W2087313521","https://openalex.org/W2095225769","https://openalex.org/W2098201295","https://openalex.org/W2105578014","https://openalex.org/W2115638833","https://openalex.org/W2139865360","https://openalex.org/W2165190426","https://openalex.org/W2309811060","https://openalex.org/W2330664058","https://openalex.org/W2413165639","https://openalex.org/W2444599217","https://openalex.org/W3004591012","https://openalex.org/W6600998656","https://openalex.org/W6608076522","https://openalex.org/W6632766574","https://openalex.org/W6715595936"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W2586801360","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"Clinical":[0,88,121],"notes":[1,89],"contain":[2],"rich":[3],"information":[4,42],"about":[5],"dietary":[6,15,292],"supplements,":[7,230],"which":[8,275],"are":[9],"critical":[10],"for":[11,221,251,254,257,261,290],"detecting":[12],"signals":[13],"of":[14,26,30,71,92,119,142,156,159,182,189,210,215,249],"supplement":[16,31,58,72,272,293],"side":[17],"effects":[18],"and":[19,23,39,85,111,171,206,219,226,259],"interactions":[20],"between":[21],"drugs":[22],"supplements.":[24,145],"One":[25],"the":[27,47,68,93,117,149,157,174,179,187,194,211,243,267,284],"important":[28],"factors":[29],"documentation":[32],"is":[33,43],"usage":[34,59,273],"status,":[35,274],"such":[36],"as":[37,280],"started":[38],"discontinuation.":[40],"Such":[41],"usually":[44],"stored":[45],"in":[46,61,148],"unstructured":[48],"clinical":[49,62],"notes.":[50,63],"We":[51],"developed":[52,153],"a":[53,281],"rule-based":[54],"classifier":[55,150,212,233,268],"to":[56,67,242],"identify":[57],"status":[60,70,222],"The":[64,124,146,208,232],"categories":[65],"referring":[66],"patient's":[69],"use":[73],"were":[74,114],"classified":[75],"into":[76,283],"four":[77],"classes:":[78],"Continuing":[79],"(C),":[80],"Discontinued":[81],"(D),":[82],"Started":[83],"(S),":[84],"Unclassified":[86],"(U).":[87],"containing":[90],"10":[91,144],"most":[94],"commonly":[95],"consumed":[96],"supplements":[97,161,201,246],"(i.e.,":[98,162,202],"alfalfa,":[99,163],"echinacea,":[100,203],"fish":[101,204],"oil,":[102,205],"garlic,":[103,164],"ginger,":[104,165],"ginkgo,":[105,166],"ginseng,":[106,167],"melatonin,":[107],"St.":[108,168],"John's":[109,169],"Wort,":[110,170],"Vitamin":[112,172],"E)":[113],"retrieved":[115],"from":[116],"University":[118],"Minnesota":[120],"Data":[122],"Repository.":[123],"gold":[125],"standard":[126],"was":[127,151,176,240],"defined":[128],"by":[129],"manually":[130],"annotating":[131],"1000":[132],"randomly":[133],"selected":[134],"sentences":[135],"or":[136],"statements":[137],"mentioning":[138],"at":[139],"least":[140],"one":[141],"these":[143],"rules":[147],"initially":[152],"on":[154,178,198,228],"two-thirds":[155],"set":[158,197],"7":[160,229],"E);":[173],"performance":[175,209],"evaluated":[177],"remaining":[180],"one-third":[181],"this":[183],"set.":[184],"To":[185],"evaluate":[186],"generalizability":[188,237],"rules,":[190],"we":[191],"further":[192,278],"validated":[193],"second":[195],"testing":[196],"other":[199,244],"3":[200,245],"melatonin).":[207],"achieved":[213],"F-measures":[214,248],"0.95,":[216],"0.97,":[217],"0.96,":[218],"0.96":[220,250,253],"C,":[223,252],"D,":[224,255],"S,":[225,258],"U":[227],"respectively.":[231],"also":[234],"showed":[235],"good":[236],"when":[238],"it":[239],"applied":[241],"with":[247],"0.95":[256],"0.89":[260],"U.":[262],"This":[263],"study":[264],"demonstrated":[265],"that":[266],"can":[269,276],"accurately":[270],"classify":[271],"be":[277],"integrated":[279],"module":[282],"existing":[285],"natural":[286],"language":[287],"processing":[288],"pipeline":[289],"supporting":[291],"knowledge":[294],"discovery.":[295]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
