{"id":"https://openalex.org/W2575389965","doi":"https://doi.org/10.1109/bibm.2016.7822592","title":"Construction of the spatial and temporal active protein interaction network for identifying protein complexes","display_name":"Construction of the spatial and temporal active protein interaction network for identifying protein complexes","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2575389965","doi":"https://doi.org/10.1109/bibm.2016.7822592","mag":"2575389965"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822592","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822592","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077069371","display_name":"Xiangmao Meng","orcid":"https://orcid.org/0000-0002-7966-551X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangmao Meng","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","School of Information Science and Engineering, Central South University, Changsha,, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha,, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","School of Information Science and Engineering, Central South University, Changsha,, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha,, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","School of Information Science and Engineering, Central South University, Changsha,, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha,, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","School of Information Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, USA","School of Information Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"310","issue":null,"first_page":"631","last_page":"636"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6692301630973816},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.6073734760284424},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5849476456642151},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5412220358848572},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5290125012397766},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.524623692035675},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.49014338850975037},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.4497067332267761},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.44236665964126587},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.4354342222213745},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.43408292531967163},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4267120957374573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34944838285446167},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21409872174263},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1549636423587799},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14073342084884644},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10922574996948242},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10321703553199768}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6692301630973816},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.6073734760284424},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5849476456642151},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5412220358848572},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5290125012397766},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.524623692035675},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.49014338850975037},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.4497067332267761},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.44236665964126587},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.4354342222213745},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.43408292531967163},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4267120957374573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34944838285446167},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21409872174263},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1549636423587799},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14073342084884644},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10922574996948242},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10321703553199768},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2016.7822592","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822592","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"mag:2744085314","is_oa":false,"landing_page_url":"http://jglobal.jst.go.jp/en/public/20090422/201702255868997260","pdf_url":null,"source":{"id":"https://openalex.org/S4306512817","display_name":"IEEE Conference Proceedings","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"IEEE Conference Proceedings","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1262814048","https://openalex.org/W1534476081","https://openalex.org/W1969114498","https://openalex.org/W1973247012","https://openalex.org/W1987134040","https://openalex.org/W1987363726","https://openalex.org/W2007921075","https://openalex.org/W2022756254","https://openalex.org/W2030006812","https://openalex.org/W2036799174","https://openalex.org/W2047884402","https://openalex.org/W2058190388","https://openalex.org/W2058352207","https://openalex.org/W2062533676","https://openalex.org/W2068835382","https://openalex.org/W2077386490","https://openalex.org/W2098979213","https://openalex.org/W2100025044","https://openalex.org/W2107067224","https://openalex.org/W2107363136","https://openalex.org/W2111823238","https://openalex.org/W2115746733","https://openalex.org/W2123902215","https://openalex.org/W2124209157","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2142583027","https://openalex.org/W2146447390","https://openalex.org/W2155320925","https://openalex.org/W2160336706","https://openalex.org/W2160556205","https://openalex.org/W2162032011","https://openalex.org/W2166344835","https://openalex.org/W2319227129","https://openalex.org/W2324728706","https://openalex.org/W2439325218","https://openalex.org/W2513497485","https://openalex.org/W6699881934"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W1964561434","https://openalex.org/W3009672059","https://openalex.org/W2781732140","https://openalex.org/W2146757633","https://openalex.org/W3040025997","https://openalex.org/W2793661263","https://openalex.org/W2153329808","https://openalex.org/W2808780862","https://openalex.org/W2560620756"],"abstract_inverted_index":{"With":[0],"the":[1,37,40,56,59,80,84,112,121,140,155,173],"advances":[2],"in":[3,16,46,126],"high-throughput":[4],"technology,":[5],"a":[6,51,168],"large":[7],"number":[8],"of":[9,27,32,39,58,82,114,128],"protein":[10,28,95,142,157],"interactions":[11],"data":[12,73],"have":[13],"been":[14],"burgeoning":[15],"recent":[17],"years,":[18],"which":[19,175],"makes":[20],"it":[21],"possible":[22],"for":[23,55,171,179],"considering":[24],"dynamic":[25,42,102,124],"properties":[26],"interaction":[29],"networks(PINs)":[30],"instead":[31],"static":[33],"properties.":[34],"To":[35,78],"address":[36],"limitation":[38],"existing":[41],"PIN":[43],"analysis":[44],"approaches,":[45],"this":[47],"paper,":[48],"we":[49,138],"proposed":[50],"new":[52],"model-based":[53],"scheme":[54],"construction":[57],"Spatial":[60],"and":[61,74,99,135,182],"Temporal":[62],"Active":[63],"Protein":[64],"Interaction":[65],"Network":[66],"(ST-APIN)":[67],"by":[68,144],"integrating":[69],"time-course":[70],"gene":[71],"expression":[72],"subcellular":[75],"location":[76],"information.":[77],"evaluate":[79],"efficiency":[81],"ST-APIN,":[83],"commonly":[85],"used":[86,178],"classical":[87],"clustering":[88],"algorithm":[89],"MCL":[90,115],"was":[91],"adopted":[92],"to":[93],"identify":[94],"complexes":[96,143,158],"from":[97,159],"ST-APIN":[98,117,160],"other":[100,123],"three":[101,122],"PINs,":[103],"NF-APIN,":[104],"DPIN,":[105],"TC-PIN.":[106],"The":[107,151],"experimental":[108],"results":[109],"showed":[110,153],"that,":[111],"performance":[113],"on":[116,120],"outperforms":[118],"those":[119],"networks":[125],"terms":[127],"matching":[129],"with":[130],"known":[131],"complexes,":[132],"sensitivity,":[133],"specificity":[134],"f-measure.":[136],"Furthermore,":[137],"evaluated":[139],"identified":[141,156],"GO":[145],"(Gene":[146],"Ontology)":[147],"function":[148],"enrichment":[149],"analysis.":[150],"validation":[152],"that":[154],"were":[161],"more":[162],"biologically":[163],"significance.":[164],"This":[165],"study":[166],"provided":[167],"general":[169],"paradigm":[170],"constructing":[172],"ST-APINs,":[174],"can":[176],"be":[177],"theoretical":[180],"studies":[181],"clinic":[183],"applications.":[184]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
