{"id":"https://openalex.org/W2578137684","doi":"https://doi.org/10.1109/bibm.2016.7822580","title":"BioNimbuZ: A federated cloud platform for bioinformatics applications","display_name":"BioNimbuZ: A federated cloud platform for bioinformatics applications","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2578137684","doi":"https://doi.org/10.1109/bibm.2016.7822580","mag":"2578137684"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822580","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822580","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082309320","display_name":"Michel Rosa","orcid":"https://orcid.org/0000-0002-0860-1834"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Michel Rosa","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011123984","display_name":"Breno Moura","orcid":null},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Breno Moura","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007795215","display_name":"Guilherme Fay Vergara","orcid":"https://orcid.org/0000-0002-4551-2240"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Guilherme Vergara","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001188696","display_name":"Lucas Santos","orcid":"https://orcid.org/0000-0002-9388-8146"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Lucas Santos","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110944227","display_name":"Edward Ribeiro","orcid":null},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Edward Ribeiro","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054089208","display_name":"Maristela Holanda","orcid":"https://orcid.org/0000-0002-0883-2579"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maristela Holanda","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071276748","display_name":"Maria Em\u00edlia M. T. Walter","orcid":"https://orcid.org/0000-0001-6822-931X"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria Emilia Walter","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031701924","display_name":"Alet\u00e9ia Ara\u00fajo","orcid":"https://orcid.org/0000-0003-4645-6700"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Aleteia Araujo","raw_affiliation_strings":["Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science University of Bras\u00edlia - UnB District Federal, Brazil","institution_ids":["https://openalex.org/I150729083"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5082309320"],"corresponding_institution_ids":["https://openalex.org/I150729083"],"apc_list":null,"apc_paid":null,"fwci":5.3174,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.95841368,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"548","last_page":"555"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8548681735992432},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8457013368606567},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8454655408859253},{"id":"https://openalex.org/keywords/workload","display_name":"Workload","score":0.7421809434890747},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.46332496404647827},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.44453275203704834},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40896767377853394},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.35366272926330566},{"id":"https://openalex.org/keywords/wireless","display_name":"Wireless","score":0.0953323245048523}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8548681735992432},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8457013368606567},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8454655408859253},{"id":"https://openalex.org/C2778476105","wikidata":"https://www.wikidata.org/wiki/Q628539","display_name":"Workload","level":2,"score":0.7421809434890747},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.46332496404647827},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.44453275203704834},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40896767377853394},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.35366272926330566},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0953323245048523}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2016.7822580","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822580","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5799999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320323350","display_name":"Funda\u00e7\u00e3o de Apoio \u00e0 Pesquisa do Distrito Federal","ror":"https://ror.org/04djvx395"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W91781137","https://openalex.org/W1577265747","https://openalex.org/W1647942671","https://openalex.org/W1816282546","https://openalex.org/W2014241426","https://openalex.org/W2100628871","https://openalex.org/W2121211805","https://openalex.org/W2121762798","https://openalex.org/W2122425433","https://openalex.org/W2135277010","https://openalex.org/W2137653635","https://openalex.org/W2182146454","https://openalex.org/W2397776067","https://openalex.org/W2535798755","https://openalex.org/W2916621839","https://openalex.org/W6603729602","https://openalex.org/W6675095805","https://openalex.org/W6685548511"],"related_works":["https://openalex.org/W2000785801","https://openalex.org/W986318368","https://openalex.org/W2384410913","https://openalex.org/W2352878646","https://openalex.org/W2004734601","https://openalex.org/W2130149817","https://openalex.org/W2990194547","https://openalex.org/W1480123525","https://openalex.org/W2620865396","https://openalex.org/W2547038763"],"abstract_inverted_index":{"Challenges":[0],"in":[1,119],"bioinformatics":[2,90,106],"include":[3],"tools":[4,26],"to":[5,11,88],"treat":[6],"large-scale":[7],"processing,":[8],"mainly":[9],"due":[10],"the":[12,52,64,78,112],"large":[13],"volumes":[14],"of":[15,24,54,66],"data":[16],"generated":[17,110],"by":[18,111],"high-throughput":[19],"sequencing":[20],"machines.":[21],"Besides,":[22],"many":[23],"these":[25,67],"are":[27,47,58],"not":[28,33,61,70],"user":[29],"friendly,":[30],"and":[31,45,49,63,93],"do":[32,69],"distribute":[34],"their":[35,73],"workloads":[36],"properly.":[37],"In":[38],"federated":[39,79],"cloud":[40,80],"environments,":[41],"even":[42],"though":[43],"services":[44],"resources":[46],"shared":[48],"available":[50],"online,":[51],"processes":[53,68],"a":[55,84,104],"workflow":[56],"execution":[57],"almost":[59],"entirely":[60],"automated,":[62],"majority":[65],"efficiently":[71],"balance":[72],"workloads.":[74],"This":[75],"paper":[76],"presents":[77],"platform,":[81],"called":[82],"BioNimbuZ,":[83],"hybrid":[85],"platform":[86],"designed":[87],"execute":[89],"applications":[91],"easily":[92],"efficiently,":[94],"with":[95,108],"good":[96,117],"workload":[97],"balance.":[98],"Our":[99],"tests":[100],"were":[101],"performed":[102],"using":[103],"real":[105],"workflow,":[107],"fragments":[109],"Illumina":[113],"sequencer,":[114],"having":[115],"achieved":[116],"performance":[118],"practice.":[120]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
