{"id":"https://openalex.org/W2573527145","doi":"https://doi.org/10.1109/bibm.2016.7822518","title":"Analysis of rumen microbial community in cattle through the integration of metagenomic and network-based approaches","display_name":"Analysis of rumen microbial community in cattle through the integration of metagenomic and network-based approaches","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2573527145","doi":"https://doi.org/10.1109/bibm.2016.7822518","mag":"2573527145"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822518","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.ulster.ac.uk/en/publications/51d69896-75f5-4ab3-8169-9332e217ded6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100379058","display_name":"Haiying Wang","orcid":"https://orcid.org/0000-0001-8358-9065"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Haiying Wang","raw_affiliation_strings":["School of Computing and Mathematics, Computer Science Research Institute Ulster University, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Mathematics, Computer Science Research Institute Ulster University, United Kingdom","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024401909","display_name":"Huiru Zheng","orcid":"https://orcid.org/0000-0001-7648-8709"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Huiru Zheng","raw_affiliation_strings":["School of Computing and Mathematics, Computer Science Research Institute Ulster University, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Mathematics, Computer Science Research Institute Ulster University, United Kingdom","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024303177","display_name":"Fiona Browne","orcid":"https://orcid.org/0000-0003-0443-4730"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fiona Browne","raw_affiliation_strings":["School of Computing and Mathematics, Computer Science Research Institute Ulster University, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Mathematics, Computer Science Research Institute Ulster University, United Kingdom","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029107038","display_name":"R. Roehe","orcid":"https://orcid.org/0000-0002-4880-3756"},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rainer Roehe","raw_affiliation_strings":["Future Farming Systems, Scotland's Rural College, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Future Farming Systems, Scotland's Rural College, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025244026","display_name":"R.J. Dewhurst","orcid":"https://orcid.org/0000-0002-9357-7372"},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard J. Dewhurst","raw_affiliation_strings":["Future Farming Systems, Scotland's Rural College, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Future Farming Systems, Scotland's Rural College, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067553162","display_name":"Felix Engel","orcid":"https://orcid.org/0000-0002-3060-7052"},"institutions":[{"id":"https://openalex.org/I4210124952","display_name":"Research Institute for Telecommunication Cooperation","ror":"https://ror.org/02wena850","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210124952"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Felix Engel","raw_affiliation_strings":["Research Institute for Telecommunication and Cooperation, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Telecommunication and Cooperation, Germany","institution_ids":["https://openalex.org/I4210124952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086429143","display_name":"Matthias Hemmje","orcid":"https://orcid.org/0000-0001-8293-2802"},"institutions":[{"id":"https://openalex.org/I4210124952","display_name":"Research Institute for Telecommunication Cooperation","ror":"https://ror.org/02wena850","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210124952"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Hemmje","raw_affiliation_strings":["Research Institute for Telecommunication and Cooperation, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Telecommunication and Cooperation, Germany","institution_ids":["https://openalex.org/I4210124952"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046492167","display_name":"Paul Walsh","orcid":"https://orcid.org/0000-0002-4988-6901"},"institutions":[{"id":"https://openalex.org/I4210141656","display_name":"NSilico (Ireland)","ror":"https://ror.org/045x5zp74","country_code":"IE","type":"company","lineage":["https://openalex.org/I4210141656"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Paul Walsh","raw_affiliation_strings":["NSilico Life Science Ltd., Cork, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NSilico Life Science Ltd., Cork, Ireland","institution_ids":["https://openalex.org/I4210141656"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"198","last_page":"203"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10098","display_name":"Ruminant Nutrition and Digestive Physiology","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10098","display_name":"Ruminant Nutrition and Digestive Physiology","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.947376012802124},{"id":"https://openalex.org/keywords/rumen","display_name":"Rumen","score":0.7047891020774841},{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.6436023712158203},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5939821600914001},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.585010826587677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5755691528320312},{"id":"https://openalex.org/keywords/microbial-population-biology","display_name":"Microbial population biology","score":0.5634260177612305},{"id":"https://openalex.org/keywords/community-structure","display_name":"Community structure","score":0.4250670075416565},{"id":"https://openalex.org/keywords/methane-emissions","display_name":"Methane emissions","score":0.41734033823013306},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40350213646888733},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.25487178564071655},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18981704115867615},{"id":"https://openalex.org/keywords/methane","display_name":"Methane","score":0.18322357535362244},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.136290043592453},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.12724292278289795},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0913543701171875},{"id":"https://openalex.org/keywords/food-science","display_name":"Food science","score":0.07739433646202087}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.947376012802124},{"id":"https://openalex.org/C70262065","wikidata":"https://www.wikidata.org/wiki/Q427652","display_name":"Rumen","level":3,"score":0.7047891020774841},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.6436023712158203},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5939821600914001},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.585010826587677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5755691528320312},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.5634260177612305},{"id":"https://openalex.org/C133079900","wikidata":"https://www.wikidata.org/wiki/Q5155065","display_name":"Community structure","level":2,"score":0.4250670075416565},{"id":"https://openalex.org/C2776208129","wikidata":"https://www.wikidata.org/wiki/Q30672844","display_name":"Methane emissions","level":3,"score":0.41734033823013306},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40350213646888733},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.25487178564071655},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18981704115867615},{"id":"https://openalex.org/C516920438","wikidata":"https://www.wikidata.org/wiki/Q37129","display_name":"Methane","level":2,"score":0.18322357535362244},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.136290043592453},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.12724292278289795},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0913543701171875},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.07739433646202087},{"id":"https://openalex.org/C100544194","wikidata":"https://www.wikidata.org/wiki/Q41760","display_name":"Fermentation","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm.2016.7822518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822518","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:openaire/51d69896-75f5-4ab3-8169-9332e217ded6","is_oa":true,"landing_page_url":"https://pure.ulster.ac.uk/en/publications/51d69896-75f5-4ab3-8169-9332e217ded6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402454","display_name":"Ulster University Research Portal (Ulster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138801177","host_organization_name":"University of Ulster","host_organization_lineage":["https://openalex.org/I138801177"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wang, H HY, Zheng, H, Browne, F, Roehe, R, Dewhurst, R J, Engel, F, Hemmje, M & Walsh, P 2017, Analysis of Rumen Microbial Community in Cattle through the Integration of Metagenomic and Network-based Approaches. in Unknown Host Publication. IEEE, pp. 198-203, IEEE International Conference on Bioinformatics and Biomedicine 2016, 19/01/17. https://doi.org/10.1109/BIBM.2016.7822518","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:pure.atira.dk:publications/51d69896-75f5-4ab3-8169-9332e217ded6","is_oa":true,"landing_page_url":"http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7822518&isnumber=7822470","pdf_url":null,"source":{"id":"https://openalex.org/S4306402454","display_name":"Ulster University Research Portal (Ulster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138801177","host_organization_name":"University of Ulster","host_organization_lineage":["https://openalex.org/I138801177"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang, H HY, Zheng, H, Browne, F, Roehe, R, Dewhurst, R J, Engel, F, Hemmje, M & Walsh, P 2017, Analysis of Rumen Microbial Community in Cattle through the Integration of Metagenomic and Network-based Approaches. in Unknown Host Publication. IEEE, pp. 198-203, IEEE International Conference on Bioinformatics and Biomedicine 2016, 19/01/17. https://doi.org/10.1109/BIBM.2016.7822518","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:openaire/51d69896-75f5-4ab3-8169-9332e217ded6","is_oa":true,"landing_page_url":"https://pure.ulster.ac.uk/en/publications/51d69896-75f5-4ab3-8169-9332e217ded6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402454","display_name":"Ulster University Research Portal (Ulster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138801177","host_organization_name":"University of Ulster","host_organization_lineage":["https://openalex.org/I138801177"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wang, H HY, Zheng, H, Browne, F, Roehe, R, Dewhurst, R J, Engel, F, Hemmje, M & Walsh, P 2017, Analysis of Rumen Microbial Community in Cattle through the Integration of Metagenomic and Network-based Approaches. in Unknown Host Publication. IEEE, pp. 198-203, IEEE International Conference on Bioinformatics and Biomedicine 2016, 19/01/17. https://doi.org/10.1109/BIBM.2016.7822518","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6176348316","display_name":null,"funder_award_id":"BB/N01720X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W289419902","https://openalex.org/W1496933752","https://openalex.org/W1572955702","https://openalex.org/W1726212020","https://openalex.org/W1842963151","https://openalex.org/W1846732964","https://openalex.org/W1868267074","https://openalex.org/W1923679466","https://openalex.org/W1969346416","https://openalex.org/W1974616659","https://openalex.org/W2074617510","https://openalex.org/W2083170339","https://openalex.org/W2094238140","https://openalex.org/W2108161004","https://openalex.org/W2112513984","https://openalex.org/W2144656637","https://openalex.org/W2147783737","https://openalex.org/W2148663653","https://openalex.org/W2159675211","https://openalex.org/W2163480486","https://openalex.org/W2164748414","https://openalex.org/W2265969486","https://openalex.org/W2275915069","https://openalex.org/W2290307730","https://openalex.org/W2328187444","https://openalex.org/W2336193318","https://openalex.org/W4255845836","https://openalex.org/W6610456749"],"related_works":["https://openalex.org/W2383574050","https://openalex.org/W2072282124","https://openalex.org/W2349060254","https://openalex.org/W1984271281","https://openalex.org/W2348216826","https://openalex.org/W3203680519","https://openalex.org/W2367400012","https://openalex.org/W2186541287","https://openalex.org/W2121977657","https://openalex.org/W3126754399"],"abstract_inverted_index":{"A":[0,148],"better":[1],"understanding":[2],"of":[3,6,28,33,57,67,84,90,94,131,140],"the":[4,11,30,48,55,64,76,91,108,114,122,132,152],"composition":[5],"rumen":[7,49],"microbial":[8,17,34,50,69,85,172],"communities":[9],"and":[10,16,22,59,81],"association":[12],"between":[13],"host":[14],"genetic":[15],"activities":[18],"has":[19,118],"important":[20],"applications":[21],"implication":[23],"in":[24,42,52,72,143],"bioscience.":[25],"Being":[26],"capable":[27],"revealing":[29],"full":[31],"extent":[32],"gene":[35],"diversity,":[36],"metagenomics-based":[37],"approaches":[38],"hold":[39],"great":[40],"promises":[41],"this":[43,95],"endeavor.":[44],"This":[45],"study":[46,96],"investigates":[47],"community":[51],"cattle":[53],"through":[54],"integration":[56],"metagenomic":[58],"network-based":[60],"approaches.":[61],"Based":[62],"on":[63],"relative":[65],"abundance":[66,153],"1570":[68],"genes":[70,86,173],"identified":[71],"a":[73,100,125],"metagenomics":[74],"analysis,":[75],"co-abundance":[77,115],"network":[78,123],"was":[79,146],"constructed":[80],"functional":[82],"modules":[83,135],"were":[87],"identified.":[88],"One":[89],"main":[92,134],"contributions":[93],"is":[97,159,168],"to":[98,105,112],"develop":[99],"random":[101],"matrix":[102],"theory-based":[103],"approach":[104],"automatically":[106],"determine":[107],"correlation":[109],"threshold":[110],"used":[111],"construct":[113],"network.":[116],"It":[117],"been":[119],"shown":[120],"that":[121,156],"exhibits":[124],"highly":[126,169],"modular":[127],"structure":[128],"with":[129,162,171,175],"each":[130,144],"three":[133],"well":[136],"separated.":[137],"The":[138],"involvement":[139],"KEGG":[141],"pathways":[142],"module":[145],"analysed.":[147],"close":[149],"look":[150],"at":[151],"profiles":[154],"highlights":[155],"Module":[157,166],"B":[158],"strongly":[160],"associated":[161,174],"methane":[163],"emissions":[164],"while":[165],"C":[167],"enriched":[170],"feed":[176],"conversion":[177],"efficiency.":[178]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
