{"id":"https://openalex.org/W2578700537","doi":"https://doi.org/10.1109/bibm.2016.7822498","title":"Compressing genome resequencing data via the Maximal Longest Factor","display_name":"Compressing genome resequencing data via the Maximal Longest Factor","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2578700537","doi":"https://doi.org/10.1109/bibm.2016.7822498","mag":"2578700537"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822498","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822498","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000545508","display_name":"Richard Beal","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Richard Beal","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113706279","display_name":"Aliya Farheen","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aliya Farheen","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032670797","display_name":"Don Adjeroh","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Don Adjeroh","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV","institution_ids":["https://openalex.org/I12097938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000545508"],"corresponding_institution_ids":["https://openalex.org/I12097938"],"apc_list":null,"apc_paid":null,"fwci":0.4285,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.80552769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"33","issue":null,"first_page":"92","last_page":"97"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.6769909858703613},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5906498432159424},{"id":"https://openalex.org/keywords/factor","display_name":"Factor (programming language)","score":0.5240245461463928},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5212762355804443},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5175294280052185},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4741874635219574},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.47231289744377136},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4279436469078064},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4174676835536957},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2707507312297821},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26916009187698364},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2579846680164337},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13971298933029175}],"concepts":[{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.6769909858703613},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5906498432159424},{"id":"https://openalex.org/C2781039887","wikidata":"https://www.wikidata.org/wiki/Q1391724","display_name":"Factor (programming language)","level":2,"score":0.5240245461463928},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5212762355804443},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5175294280052185},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4741874635219574},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.47231289744377136},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4279436469078064},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4174676835536957},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2707507312297821},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26916009187698364},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2579846680164337},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13971298933029175},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2016.7822498","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822498","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1488229309","https://openalex.org/W1575413654","https://openalex.org/W1939917798","https://openalex.org/W1965743524","https://openalex.org/W1980569719","https://openalex.org/W2000466469","https://openalex.org/W2039486775","https://openalex.org/W2085522429","https://openalex.org/W2101247207","https://openalex.org/W2101305463","https://openalex.org/W2108619226","https://openalex.org/W2111044311","https://openalex.org/W2117953160","https://openalex.org/W2118487713","https://openalex.org/W2142003566","https://openalex.org/W2146826715","https://openalex.org/W2202150796","https://openalex.org/W2323180197","https://openalex.org/W2514465121","https://openalex.org/W3105559940","https://openalex.org/W3109638071","https://openalex.org/W4231096068","https://openalex.org/W4255480201","https://openalex.org/W6650363101","https://openalex.org/W6681289686","https://openalex.org/W6813485571"],"related_works":["https://openalex.org/W2787993192","https://openalex.org/W2158269427","https://openalex.org/W4381280689","https://openalex.org/W2847365777","https://openalex.org/W3128025644","https://openalex.org/W2355048207","https://openalex.org/W2750422482","https://openalex.org/W3125827053","https://openalex.org/W2920521957","https://openalex.org/W4361984506"],"abstract_inverted_index":{"We":[0,52],"propose":[1,58],"a":[2,15,33,59,77,82],"new":[3,34,60],"algorithm":[4],"for":[5,19],"reference-based":[6,17],"compression":[7,61,78],"of":[8,80],"genome":[9],"resequencing":[10,21],"data.":[11],"First,":[12],"we":[13,36],"recap":[14],"recent":[16],"technique":[18],"compressing":[20],"data":[22],"via":[23],"the":[24,30,39,49,55,63,69],"Longest":[25,41,65],"Previous":[26],"Factor":[27,42,66],"(LPF).":[28],"Viewing":[29],"problem":[31],"from":[32],"light,":[35],"call":[37],"this":[38],"Sequential":[40],"(SLF)":[43],"method,":[44],"and":[45,57,105,108],"introduce":[46],"improvements":[47],"to":[48],"SLF":[50],"approach.":[51],"further":[53],"leverage":[54],"LPF":[56],"method:":[62],"Maximal":[64],"(MLF).":[67],"For":[68],"Homo":[70],"sapiens":[71],"genome,":[72],"our":[73],"proposed":[74],"MLF":[75],"achieves":[76],"ratio":[79],"486,":[81],"significant":[83],"improvement":[84],"over":[85],"399":[86],"(newly":[87],"improved":[88],"SLF),":[89],"360":[90],"(original":[91],"SLF,":[92],"Beal,":[93],"et":[94,101],"al.,":[95,102],"BMC":[96],"Genomics,":[97],"2016),":[98],"171":[99],"(Pinho,":[100],"NAR,":[103,110],"2011),":[104],"157":[106],"(Wang":[107],"Zhang,":[109],"2011).":[111]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}