{"id":"https://openalex.org/W2578626788","doi":"https://doi.org/10.1109/bibm.2016.7822479","title":"Networks and models for the integrated analysis of multi omics data","display_name":"Networks and models for the integrated analysis of multi omics data","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2578626788","doi":"https://doi.org/10.1109/bibm.2016.7822479","mag":"2578626788"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2016.7822479","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822479","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100460439","display_name":"\ufeffSun Kim","orcid":"https://orcid.org/0000-0001-5385-9546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sun Kim","raw_affiliation_strings":["Bioinformatics Institute of Seoul National University, Korea"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute of Seoul National University, Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100460439"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11313727,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9437000155448914,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6578375101089478},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.6549352407455444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.601632833480835},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4937306344509125},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4510853886604309},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3915061354637146},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3515647351741791},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3454771935939789},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3453238606452942},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.33106422424316406},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15093755722045898},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07727417349815369}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6578375101089478},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.6549352407455444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.601632833480835},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4937306344509125},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4510853886604309},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3915061354637146},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3515647351741791},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3454771935939789},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3453238606452942},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33106422424316406},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15093755722045898},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07727417349815369}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2016.7822479","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2016.7822479","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.41999998688697815,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4366603091","https://openalex.org/W2485141070","https://openalex.org/W2979314934","https://openalex.org/W2146527561","https://openalex.org/W2770084104","https://openalex.org/W3000356375","https://openalex.org/W4386476622","https://openalex.org/W4387875454","https://openalex.org/W3195112886","https://openalex.org/W2590543013"],"abstract_inverted_index":{"These":[0],"days,":[1],"genome-wide":[2],"measurements":[3],"of":[4,19,33,49,62,68,80,85,135,139,180,237,245,251,269],"genetic":[5,39,96,121,198],"and":[6,40,97,122,199,224,259,288,293,303],"epigenetics":[7,15],"events,":[8,201],"a.k.a":[9],"omics":[10,34,69,136,181,246],"data,":[11],"are":[12,43,87,125],"routinely":[13],"produced;":[14],"is":[16,71,105,129,143,254],"control":[17],"mechanisms":[18],"genetics":[20],"events":[21,42,124,282],"as":[22,61,206,276],"epi-means":[23],"`on'":[24],"or":[25,77,266],"`upon'.":[26],"As":[27],"a":[28,30,90,106],"result,":[29],"huge":[31],"amount":[32,48],"data":[35,50,70,99,113,137,182],"measured":[36,100],"from":[37],"different":[38,102,140,185,197],"epigenetic":[41,98,123,200,281],"available.":[44],"For":[45],"example,":[46],"the":[47,66,83,152,175,212,222,235,242,296],"at":[51,183,272,295],"The":[52],"Cancer":[53],"Genome":[54],"Atlas(TCGA)":[55],"alone":[56],"exceeds":[57],"2.5":[58],"peta":[59],"byte":[60],"October":[63],"2016.":[64],"Unfortunately,":[65],"dimensions":[67],"huge,":[72],"typically":[73,89],"tens":[74],"to":[75,92,131,232,255,263],"hundreds":[76],"even":[78,144],"millions":[79],"thousands":[81],"while":[82],"number":[84],"samples":[86],"limited":[88],"few":[91],"thousands.":[93],"Thus":[94,127],"mining":[95,219],"in":[101,211],"phenotype":[103,223],"conditions":[104],"very":[107],"challenging":[108],"problem,":[109],"that":[110],"is,":[111],"small":[112],"sets":[114,138],"on":[115,192,221,234],"extremely":[116],"high":[117],"dimensions.":[118,226],"Furthermore,":[119],"all":[120,158],"inter-related.":[126],"it":[128],"necessary":[130],"perform":[132],"integrated":[133,178,243],"analysis":[134,162,179,244,258],"types,":[141],"which":[142,202],"more":[145],"challenging.":[146],"To":[147],"address":[148],"these":[149],"technical":[150],"challenges,":[151],"bioinformatics":[153],"community":[154],"has":[155,172],"used":[156],"virtually":[157],"known":[159],"network":[160,176,257],"based":[161,177],"techniques,":[163],"including":[164,283,300],"recently":[165,230],"developed":[166],"deep":[167,238,260],"neural":[168],"networks.":[169],"My":[170],"group":[171],"been":[173,190,217],"trying":[174],"three":[184],"levels.":[186],"First,":[187],"we":[188,215,228],"have":[189,216,229],"investigating":[191],"computational":[193],"methods":[194,207],"for":[195,208,241],"associating":[196],"can":[203],"be":[204],"viewed":[205],"defining":[209],"edges":[210],"network.":[213],"Second,":[214],"developing":[218],"subnetworks":[220],"time":[225],"Third,":[227],"begun":[231],"investigate":[233],"use":[236],"learning":[239,261],"techniques":[240,262],"data.":[247],"An":[248],"important":[249],"goal":[250],"our":[252],"research":[253],"combine":[256],"construct":[264],"models":[265],"draw":[267],"maps":[268],"cancer":[270],"cells":[271],"multiple":[273],"levels":[274],"such":[275],"genomic":[277],"mutations,":[278],"gene":[279],"activation/suppressions,":[280],"DNA":[284],"methylation,":[285],"histone":[286],"modifications,":[287],"miRNA":[289],"interference,":[290],"biological":[291],"pathways,":[292],"finally":[294],"whole":[297],"cell":[298],"level":[299],"tumor":[301],"heterogeneity":[302],"clonal":[304],"evolution.":[305]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
