{"id":"https://openalex.org/W2196818876","doi":"https://doi.org/10.1109/bibm.2015.7359929","title":"A unified approach to the computation and analysis of strings of gene expression states","display_name":"A unified approach to the computation and analysis of strings of gene expression states","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2196818876","doi":"https://doi.org/10.1109/bibm.2015.7359929","mag":"2196818876"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359929","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359929","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082469529","display_name":"Jaime Seguel","orcid":null},"institutions":[{"id":"https://openalex.org/I60388903","display_name":"University of Puerto Rico-Mayaguez","ror":"https://ror.org/00wek6x04","country_code":"PR","type":"education","lineage":["https://openalex.org/I200399037","https://openalex.org/I60388903"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Jaime Seguel","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Puerto Rico at Mayag\u00fcez, Mayag\u00fcez, PR"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Puerto Rico at Mayag\u00fcez, Mayag\u00fcez, PR","institution_ids":["https://openalex.org/I60388903"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070230493","display_name":"Marie Lluberes","orcid":null},"institutions":[{"id":"https://openalex.org/I60388903","display_name":"University of Puerto Rico-Mayaguez","ror":"https://ror.org/00wek6x04","country_code":"PR","type":"education","lineage":["https://openalex.org/I200399037","https://openalex.org/I60388903"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Marie Lluberes","raw_affiliation_strings":["Doctoral Program in Computing and Information Sciences and Engineering, University of Puerto Rico at Mayag\u00fcez"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Doctoral Program in Computing and Information Sciences and Engineering, University of Puerto Rico at Mayag\u00fcez","institution_ids":["https://openalex.org/I60388903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I60388903"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"1687","last_page":"1693"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.7140070199966431},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6995705962181091},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.6206474304199219},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5900084376335144},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5633068680763245},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5257676243782043},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.494750440120697},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.4802134931087494},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.47181689739227295},{"id":"https://openalex.org/keywords/probability-distribution","display_name":"Probability distribution","score":0.4685806930065155},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4351726174354553},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.4127707779407501},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40019387006759644},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28180229663848877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1585429310798645}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.7140070199966431},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6995705962181091},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.6206474304199219},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5900084376335144},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5633068680763245},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5257676243782043},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.494750440120697},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.4802134931087494},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.47181689739227295},{"id":"https://openalex.org/C149441793","wikidata":"https://www.wikidata.org/wiki/Q200726","display_name":"Probability distribution","level":2,"score":0.4685806930065155},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4351726174354553},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.4127707779407501},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40019387006759644},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28180229663848877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1585429310798645},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2015.7359929","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359929","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.7900000214576721,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W51833465","https://openalex.org/W1490088998","https://openalex.org/W1995802349","https://openalex.org/W2023696712","https://openalex.org/W2035104280","https://openalex.org/W2053735404","https://openalex.org/W2080374853","https://openalex.org/W2084251771","https://openalex.org/W2095588912","https://openalex.org/W2107363136","https://openalex.org/W2142400903","https://openalex.org/W2145013963","https://openalex.org/W2158973107","https://openalex.org/W2162733993","https://openalex.org/W2166105333","https://openalex.org/W4242024146","https://openalex.org/W6671521509","https://openalex.org/W6674379859","https://openalex.org/W6681478744"],"related_works":["https://openalex.org/W2943623134","https://openalex.org/W2494523064","https://openalex.org/W2588219639","https://openalex.org/W2215759665","https://openalex.org/W2030292806","https://openalex.org/W2960358116","https://openalex.org/W4287727129","https://openalex.org/W3041172967","https://openalex.org/W2749065928","https://openalex.org/W2009776842"],"abstract_inverted_index":{"The":[0,130,168],"problem":[1,44],"of":[2,9,25,36,42,56,64,98,101,115,121,126,132,183],"deciding":[3],"whether":[4],"or":[5],"not":[6],"a":[7,14,96,138,141],"concentration":[8,65,128],"messenger":[10],"RNA":[11],"corresponds":[12],"to":[13,149],"gene":[15,26,37,123],"in":[16,21,49,124,162],"expressed":[17],"state":[18,120],"is":[19,31,135,170],"crucial":[20],"the":[22,39,50,54,57,62,106,112,116,119,122,127,151,155,158,163,177],"Boolean":[23],"representation":[24],"regulatory":[27],"networks.":[28],"Since":[29],"there":[30],"no":[32],"independent":[33],"mathematical":[34],"description":[35],"expressions,":[38],"computational":[40],"answers":[41],"this":[43,69],"are":[45,179],"affected":[46],"by":[47,61,75],"uncertainties":[48,74],"model":[51],"used":[52],"for":[53],"design":[55],"computer":[58],"algorithms,":[59],"and":[60,80,140,157,176],"number":[63],"measurements":[66],"available.":[67],"In":[68],"article,":[70],"we":[71],"handle":[72],"these":[73],"computing":[76],"their":[77],"probability":[78,160],"distributions":[79],"unifying":[81],"heterogeneous":[82],"algorithmic":[83,92],"models":[84],"with":[85,137,181],"aggregation":[86],"rules.":[87],"This":[88],"approach":[89],"renders":[90],"an":[91],"framework":[93],"that":[94,145],"computes":[95],"set":[97,131],"probabilistic":[99,133],"strings":[100,134,161],"states":[102],"and,":[103],"within":[104],"it,":[105],"elected":[107,152],"string,":[108],"which":[109],"results":[110,178],"from":[111],"collective":[113],"decision":[114],"algorithms":[117],"on":[118,172],"each":[125],"measurements.":[129],"endowed":[136],"metric":[139,143],"pseudo":[142],"function":[144],"makes":[146],"it":[147],"possible":[148],"analyze":[150],"string":[153],"against":[154],"expected":[156],"highest":[159],"set,":[164],"among":[165],"other":[166],"considerations.":[167],"method":[169],"applied":[171],"biological":[173],"data":[174],"sets":[175],"compared":[180],"those":[182],"four":[184],"previously":[185],"published":[186],"algorithms.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
