{"id":"https://openalex.org/W2220279187","doi":"https://doi.org/10.1109/bibm.2015.7359900","title":"Biomarker discovery, high performance and cloud computing: A comprehensive review","display_name":"Biomarker discovery, high performance and cloud computing: A comprehensive review","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2220279187","doi":"https://doi.org/10.1109/bibm.2015.7359900","mag":"2220279187"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359900","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359900","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033442365","display_name":"Jaine K. Blayney","orcid":"https://orcid.org/0000-0001-5618-5284"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jaine Blayney","raw_affiliation_strings":["School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast"],"affiliations":[{"raw_affiliation_string":"School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089885771","display_name":"Valeriia Haberland","orcid":"https://orcid.org/0000-0002-3874-0683"},"institutions":[{"id":"https://openalex.org/I55521800","display_name":"Goldsmiths University of London","ror":"https://ror.org/01khx4a30","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I55521800"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Valeriia Haberland","raw_affiliation_strings":["Tungsten Centre for Intelligent Data Analytics, Goldsmiths, University of London"],"affiliations":[{"raw_affiliation_string":"Tungsten Centre for Intelligent Data Analytics, Goldsmiths, University of London","institution_ids":["https://openalex.org/I55521800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082152805","display_name":"Gaye Lightbody","orcid":"https://orcid.org/0000-0002-1370-3704"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gaye Lightbody","raw_affiliation_strings":["School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast"],"affiliations":[{"raw_affiliation_string":"School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024303177","display_name":"Fiona Browne","orcid":"https://orcid.org/0000-0003-0443-4730"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fiona Browne","raw_affiliation_strings":["School of Computing and Mathematics, Ulster University"],"affiliations":[{"raw_affiliation_string":"School of Computing and Mathematics, Ulster University","institution_ids":["https://openalex.org/I138801177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5033442365"],"corresponding_institution_ids":["https://openalex.org/I126231945"],"apc_list":null,"apc_paid":null,"fwci":0.4527,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.66863479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"26","issue":null,"first_page":"1514","last_page":"1519"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.8364189863204956},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7462056875228882},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7188132405281067},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5833134651184082},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5051665902137756},{"id":"https://openalex.org/keywords/emerging-technologies","display_name":"Emerging technologies","score":0.4622385799884796},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.43465158343315125},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.36696940660476685},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.3222549557685852},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16876325011253357},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.14544028043746948},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08671995997428894}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.8364189863204956},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7462056875228882},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7188132405281067},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5833134651184082},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5051665902137756},{"id":"https://openalex.org/C207267971","wikidata":"https://www.wikidata.org/wiki/Q120208","display_name":"Emerging technologies","level":2,"score":0.4622385799884796},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.43465158343315125},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.36696940660476685},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.3222549557685852},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16876325011253357},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.14544028043746948},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08671995997428894},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm.2015.7359900","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359900","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.gold.ac.uk:18629","is_oa":false,"landing_page_url":"https://research.gold.ac.uk/view/goldsmiths/Haberland=3AValeriia=3A=3A.html>;","pdf_url":null,"source":{"id":"https://openalex.org/S4306400496","display_name":"Goldsmiths (University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I166337079","host_organization_name":"Queen Mary University of London","host_organization_lineage":["https://openalex.org/I166337079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Accepted Version","raw_type":"public"},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/b860ee93-1fe1-4864-b4eb-683e4df7297e","is_oa":false,"landing_page_url":"https://pure.qub.ac.uk/en/publications/b860ee93-1fe1-4864-b4eb-683e4df7297e","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Blayney , J , Haberland , V , Lightbody , G &amp; Browne , F 2015 , Biomarker Discovery, High Performance and Cloud Computing: A Comprehensive Review . in Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference . pp. 1514-1519 . https://doi.org/10.1109/BIBM.2015.7359900","raw_type":"contributionToPeriodical"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W1486696347","https://openalex.org/W1531356352","https://openalex.org/W1972025839","https://openalex.org/W1977046764","https://openalex.org/W1977512185","https://openalex.org/W1981509058","https://openalex.org/W1986700282","https://openalex.org/W1991462891","https://openalex.org/W1993945142","https://openalex.org/W1997512351","https://openalex.org/W2014578307","https://openalex.org/W2026942191","https://openalex.org/W2027374652","https://openalex.org/W2037113830","https://openalex.org/W2039230357","https://openalex.org/W2042990492","https://openalex.org/W2051039710","https://openalex.org/W2065783627","https://openalex.org/W2066131085","https://openalex.org/W2090705041","https://openalex.org/W2100830825","https://openalex.org/W2103441770","https://openalex.org/W2105882193","https://openalex.org/W2106074773","https://openalex.org/W2108234281","https://openalex.org/W2109701112","https://openalex.org/W2112113834","https://openalex.org/W2114853176","https://openalex.org/W2117096174","https://openalex.org/W2117466692","https://openalex.org/W2117683095","https://openalex.org/W2118526609","https://openalex.org/W2119180969","https://openalex.org/W2119738171","https://openalex.org/W2119908867","https://openalex.org/W2120293208","https://openalex.org/W2121762798","https://openalex.org/W2125244971","https://openalex.org/W2128985829","https://openalex.org/W2129357341","https://openalex.org/W2130854041","https://openalex.org/W2130979840","https://openalex.org/W2132619562","https://openalex.org/W2135131646","https://openalex.org/W2141579716","https://openalex.org/W2142846876","https://openalex.org/W2143142289","https://openalex.org/W2149573463","https://openalex.org/W2151713271","https://openalex.org/W2154010459","https://openalex.org/W2155698506","https://openalex.org/W2158485828","https://openalex.org/W2166837162","https://openalex.org/W2167719367","https://openalex.org/W2169150541","https://openalex.org/W2171978781","https://openalex.org/W2173213060","https://openalex.org/W2961809733","https://openalex.org/W4239429564","https://openalex.org/W6680965528"],"related_works":["https://openalex.org/W1824707887","https://openalex.org/W2068583628","https://openalex.org/W169905258","https://openalex.org/W2013271762","https://openalex.org/W1570043218","https://openalex.org/W3146449452","https://openalex.org/W2162684709","https://openalex.org/W2147457882","https://openalex.org/W2115770466","https://openalex.org/W2111726532"],"abstract_inverted_index":{"The":[0,21,85],"analysis":[1],"of":[2,13,24,56],"biological":[3],"markers":[4],"(biomarkers)":[5],"have":[6],"the":[7,42,88,94],"ability":[8],"to":[9,50],"improve":[10],"clinical":[11],"outcomes":[12],"a":[14,76],"disease":[15],"through":[16],"prediction":[17],"and":[18,38,93,102,119],"early":[19],"detection.":[20],"constant":[22],"improvement":[23],"next":[25],"generation":[26],"sequencing":[27,91],"(NGS)":[28],"technologies":[29,92,106,118],"coupled":[30],"with":[31],"falling":[32],"equipment":[33],"price":[34],"are":[35,110],"driving":[36],"research":[37,52],"application":[39],"especially":[40],"in":[41,82,97,112,122],"medical":[43],"domain.":[44],"NGS":[45],"technology":[46],"is":[47,65],"being":[48],"applied":[49],"cancer":[51],"promising":[53],"greater":[54],"understanding":[55],"carcinogenesis.":[57],"However,":[58],"as":[59,108],"sequence":[60],"capacity":[61],"grows,":[62],"algorithmic":[63],"speed":[64],"becoming":[66],"an":[67],"important":[68],"bottleneck.":[69],"To":[70],"understand":[71],"these":[72,98],"challenges":[73,115],"we":[74],"present":[75],"review":[77,86],"on":[78,90],"difficulties":[79],"currently":[80],"faced":[81],"discovering":[83],"biomarkers.":[84],"places":[87],"spotlight":[89],"bottlenecks":[95],"encountered":[96],"pipelines.":[99],"Cloud":[100],"computing":[101,105],"high":[103],"performance":[104],"such":[107],"Grid":[109],"summarized":[111],"tackling":[113],"computational":[114],"presented":[116],"by":[117],"algorithms":[120],"used":[121],"biomarker":[123],"research.":[124]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
