{"id":"https://openalex.org/W2208321927","doi":"https://doi.org/10.1109/bibm.2015.7359860","title":"Comparison of an atomic model and its cryo-EM image at the central axis of a helix","display_name":"Comparison of an atomic model and its cryo-EM image at the central axis of a helix","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2208321927","doi":"https://doi.org/10.1109/bibm.2015.7359860","mag":"2208321927","pmid":"https://pubmed.ncbi.nlm.nih.gov/27280059"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359860","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359860","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049641499","display_name":"Jing He","orcid":"https://orcid.org/0000-0002-7249-4746"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing He","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","Department of Computer Science, Old Dominion University, Norfolk, VA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","institution_ids":["https://openalex.org/I81365321"]},{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031557202","display_name":"Stephanie Zeil","orcid":null},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephanie Zeil","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","Department of Computer Science, Old Dominion University, Norfolk, VA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","institution_ids":["https://openalex.org/I81365321"]},{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022692457","display_name":"Hussam Hallak","orcid":null},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hussam Hallak","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","Department of Computer Science, Old Dominion University, Norfolk, VA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","institution_ids":["https://openalex.org/I81365321"]},{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024258237","display_name":"Kele McKaig","orcid":null},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kele McKaig","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","Department of Computer Science, Old Dominion University, Norfolk, VA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA, 23529","institution_ids":["https://openalex.org/I81365321"]},{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068517610","display_name":"Julio Kovacs","orcid":"https://orcid.org/0000-0002-1829-7119"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julio Kovacs","raw_affiliation_strings":["Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA, 23529","Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA, 23529","institution_ids":["https://openalex.org/I81365321"]},{"raw_affiliation_string":"Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010993930","display_name":"Willy Wriggers","orcid":"https://orcid.org/0000-0001-5326-3152"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Willy Wriggers","raw_affiliation_strings":["Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA, 23529","Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA, 23529","institution_ids":["https://openalex.org/I81365321"]},{"raw_affiliation_string":"Department of Mechanical & Aerospace Engineering, Old Dominion University, Norfolk, VA","institution_ids":["https://openalex.org/I81365321"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4181,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.87925252,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2015","issue":null,"first_page":"1253","last_page":"1259"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cryo-electron-microscopy","display_name":"Cryo-electron microscopy","score":0.835899293422699},{"id":"https://openalex.org/keywords/helix","display_name":"Helix (gastropod)","score":0.714316725730896},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.6514501571655273},{"id":"https://openalex.org/keywords/atomic-model","display_name":"Atomic model","score":0.5373744964599609},{"id":"https://openalex.org/keywords/electron-density","display_name":"Electron density","score":0.49492591619491577},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.4734199643135071},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.45901787281036377},{"id":"https://openalex.org/keywords/electron-microscope","display_name":"Electron microscope","score":0.4580478072166443},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.28189435601234436},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.276424378156662},{"id":"https://openalex.org/keywords/electron","display_name":"Electron","score":0.21154117584228516},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19830331206321716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18788045644760132},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.16239216923713684},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.1474238634109497},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12430721521377563},{"id":"https://openalex.org/keywords/atomic-physics","display_name":"Atomic physics","score":0.09095600247383118}],"concepts":[{"id":"https://openalex.org/C20702342","wikidata":"https://www.wikidata.org/wiki/Q5190506","display_name":"Cryo-electron microscopy","level":2,"score":0.835899293422699},{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.714316725730896},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.6514501571655273},{"id":"https://openalex.org/C194778546","wikidata":"https://www.wikidata.org/wiki/Q15308119","display_name":"Atomic model","level":2,"score":0.5373744964599609},{"id":"https://openalex.org/C125485243","wikidata":"https://www.wikidata.org/wiki/Q905186","display_name":"Electron density","level":3,"score":0.49492591619491577},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4734199643135071},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.45901787281036377},{"id":"https://openalex.org/C93877712","wikidata":"https://www.wikidata.org/wiki/Q132560","display_name":"Electron microscope","level":2,"score":0.4580478072166443},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.28189435601234436},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.276424378156662},{"id":"https://openalex.org/C147120987","wikidata":"https://www.wikidata.org/wiki/Q2225","display_name":"Electron","level":2,"score":0.21154117584228516},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19830331206321716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18788045644760132},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.16239216923713684},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.1474238634109497},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12430721521377563},{"id":"https://openalex.org/C184779094","wikidata":"https://www.wikidata.org/wiki/Q26383","display_name":"Atomic physics","level":1,"score":0.09095600247383118},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C2779965526","wikidata":"https://www.wikidata.org/wiki/Q308841","display_name":"Snail","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm.2015.7359860","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359860","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmid:27280059","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27280059","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":null},{"id":"pmh:oai:europepmc.org:3861953","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4894056","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1966323820","https://openalex.org/W1994086483","https://openalex.org/W1995043996","https://openalex.org/W1999141286","https://openalex.org/W2032219149","https://openalex.org/W2035460215","https://openalex.org/W2046141572","https://openalex.org/W2048875539","https://openalex.org/W2053880783","https://openalex.org/W2054116168","https://openalex.org/W2061208873","https://openalex.org/W2075641906","https://openalex.org/W2096732301","https://openalex.org/W2111070241","https://openalex.org/W2117264607","https://openalex.org/W2128897252","https://openalex.org/W2132629607","https://openalex.org/W2137747821","https://openalex.org/W2147791333","https://openalex.org/W2152086886","https://openalex.org/W2169358216","https://openalex.org/W6664024005"],"related_works":["https://openalex.org/W1995785876","https://openalex.org/W1971080731","https://openalex.org/W3169882331","https://openalex.org/W1506992858","https://openalex.org/W2567303839","https://openalex.org/W2517292445","https://openalex.org/W2380466031","https://openalex.org/W2561249240","https://openalex.org/W2086248151","https://openalex.org/W1520158892"],"abstract_inverted_index":{"Cryo-electron":[0],"microscopy":[1],"(cryo-EM)":[2],"is":[3,33],"an":[4],"important":[5],"biophysical":[6],"technique":[7],"that":[8],"produces":[9],"three-dimensional":[10],"(3D)":[11],"density":[12,27,49,67,81],"maps":[13,68],"at":[14],"different":[15],"resolutions.":[16],"Because":[17],"more":[18,20],"and":[19,47,72,76],"models":[21,32],"are":[22],"being":[23],"produced":[24],"from":[25,65,79],"cryo-EM":[26,66],"maps,":[28],"validation":[29],"of":[30,55,87],"the":[31,48,52,56,88],"becoming":[34],"important.":[35],"We":[36],"propose":[37],"a":[38,45],"method":[39,59,84],"for":[40,94],"measuring":[41],"local":[42],"agreement":[43],"between":[44,69],"model":[46],"map":[50],"using":[51,62],"central":[53],"axis":[54],"helix.":[57],"This":[58,83],"was":[60],"tested":[61],"19":[63],"helices":[64,78],"5.5":[70],"\u00c5":[71,74],"7.2":[73],"resolution":[75],"94":[77],"simulated":[80],"maps.":[82],"distinguished":[85],"most":[86],"well-fitting":[89],"helices,":[90],"although":[91],"challenges":[92],"exist":[93],"shorter":[95],"helices.":[96]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
