{"id":"https://openalex.org/W2209024493","doi":"https://doi.org/10.1109/bibm.2015.7359833","title":"BmQGen: Biomedical query generator for knowledge discovery","display_name":"BmQGen: Biomedical query generator for knowledge discovery","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2209024493","doi":"https://doi.org/10.1109/bibm.2015.7359833","mag":"2209024493"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359833","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359833","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087033178","display_name":"Feichen Shen","orcid":"https://orcid.org/0000-0002-7803-2331"},"institutions":[{"id":"https://openalex.org/I75421653","display_name":"University of Missouri\u2013Kansas City","ror":"https://ror.org/01w0d5g70","country_code":"US","type":"education","lineage":["https://openalex.org/I75421653"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Feichen Shen","raw_affiliation_strings":["CSEE Department, University of Missouri-Kansas City, USA"],"affiliations":[{"raw_affiliation_string":"CSEE Department, University of Missouri-Kansas City, USA","institution_ids":["https://openalex.org/I75421653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051769953","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2529-7341"},"institutions":[{"id":"https://openalex.org/I4210128510","display_name":"Department of Medical Sciences","ror":"https://ror.org/049c9xv68","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210128510"]}],"countries":["BY"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of Health Sciences Research"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research","institution_ids":["https://openalex.org/I4210128510"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063986559","display_name":"Sunghwan Sohn","orcid":"https://orcid.org/0000-0001-8256-2602"},"institutions":[{"id":"https://openalex.org/I4210128510","display_name":"Department of Medical Sciences","ror":"https://ror.org/049c9xv68","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210128510"]}],"countries":["BY"],"is_corresponding":false,"raw_author_name":"Sunghwan Sohn","raw_affiliation_strings":["Department of Health Sciences Research"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research","institution_ids":["https://openalex.org/I4210128510"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031323337","display_name":"David W. Larson","orcid":"https://orcid.org/0000-0001-9177-4586"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David W Larson","raw_affiliation_strings":["Department of Surgery, Mayo Clinic College of Medicine, USA"],"affiliations":[{"raw_affiliation_string":"Department of Surgery, Mayo Clinic College of Medicine, USA","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007672179","display_name":"Yugyung Lee","orcid":"https://orcid.org/0000-0002-1619-1695"},"institutions":[{"id":"https://openalex.org/I75421653","display_name":"University of Missouri\u2013Kansas City","ror":"https://ror.org/01w0d5g70","country_code":"US","type":"education","lineage":["https://openalex.org/I75421653"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yugyung Lee","raw_affiliation_strings":["CSEE Department, University of Missouri-Kansas City, USA"],"affiliations":[{"raw_affiliation_string":"CSEE Department, University of Missouri-Kansas City, USA","institution_ids":["https://openalex.org/I75421653"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087033178"],"corresponding_institution_ids":["https://openalex.org/I75421653"],"apc_list":null,"apc_paid":null,"fwci":1.3557,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.81073952,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1092","last_page":"1097"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8004705905914307},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5532556772232056},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5479922890663147},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.5370731353759766},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5186559557914734},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4749072790145874},{"id":"https://openalex.org/keywords/closeness","display_name":"Closeness","score":0.44725823402404785},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.36838197708129883},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30674201250076294},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.24898919463157654},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.13772517442703247}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8004705905914307},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5532556772232056},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5479922890663147},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.5370731353759766},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5186559557914734},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4749072790145874},{"id":"https://openalex.org/C2779545769","wikidata":"https://www.wikidata.org/wiki/Q5135364","display_name":"Closeness","level":2,"score":0.44725823402404785},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.36838197708129883},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30674201250076294},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.24898919463157654},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.13772517442703247},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2015.7359833","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359833","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W28820520","https://openalex.org/W1525467295","https://openalex.org/W1549103420","https://openalex.org/W1588808376","https://openalex.org/W1648973846","https://openalex.org/W1968659469","https://openalex.org/W1995450389","https://openalex.org/W2009591769","https://openalex.org/W2023971898","https://openalex.org/W2095754765","https://openalex.org/W2159675211","https://openalex.org/W2167187514","https://openalex.org/W2170984819","https://openalex.org/W2323622486","https://openalex.org/W2471366537","https://openalex.org/W3192290435","https://openalex.org/W6635103443"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2127299687","https://openalex.org/W2726617685","https://openalex.org/W1794266373","https://openalex.org/W2159818280","https://openalex.org/W22148886","https://openalex.org/W4255991504","https://openalex.org/W2111194626","https://openalex.org/W1562796463","https://openalex.org/W3135477004"],"abstract_inverted_index":{"A":[0],"large":[1],"number":[2],"of":[3,46,73,89,96,160,176,185],"structured":[4],"and":[5,104,120,135,165,189],"unstructured":[6,107],"data":[7,20,155,178],"(e.g.,":[8],"EHRs,":[9],"ontologies,":[10],"reports)":[11],"have":[12,112,181],"been":[13],"introduced":[14],"by":[15],"the":[16,71,97,100,186,191,197,206],"biomedical":[17,114,141],"community.":[18],"Cross-domain":[19],"integration":[21],"is":[22,42,51,78,92,125],"identified":[23],"as":[24],"an":[25,33,43],"important":[26,44],"research":[27],"problem":[28],"for":[29,81,128,138],"translational":[30],"research.":[31,49],"From":[32],"application":[34],"perspective,":[35],"identifying":[36],"related":[37],"concepts":[38,61],"among":[39],"medical":[40],"ontologies":[41,105],"goal":[45],"life":[47],"science":[48],"It":[50,91],"essential":[52],"to":[53,59,83,106,131,169],"analyze":[54],"how":[55],"relations":[56],"are":[57],"specified":[58],"connect":[60],"in":[62,116],"a":[63,94,117,126,129,150,174,183],"single":[64],"ontology":[65],"or":[66],"across":[67],"multiple":[68],"ontologies.":[69,90],"With":[70],"explosion":[72],"cross":[74,102,139],"domain":[75,140],"datasets,":[76],"it":[77],"extremely":[79],"hard":[80],"researchers":[82],"discover":[84,171],"knowledge":[85,115,142,172],"from":[86,205],"current":[87],"infrastructures":[88],"mainly":[93],"lack":[95],"connectivity":[98],"between":[99],"ontologies'":[101],"domains":[103],"data;":[108],"even":[109],"if":[110],"they":[111],"specific":[113],"more":[118],"general":[119],"comprehensive":[121],"level.":[122],"Therefore,":[123],"there":[124],"need":[127],"mechanism":[130],"do":[132],"semantic":[133,158],"partition":[134],"query":[136,193],"generation":[137],"discovery.":[143],"In":[144],"this":[145],"paper,":[146],"we":[147],"present":[148],"such":[149],"model":[151,194],"that":[152],"clusters":[153],"integrated":[154],"based":[156,195],"on":[157,196],"closeness":[159],"predicates":[161],"into":[162],"different":[163],"groups":[164],"produces":[166],"meaningful":[167],"queries":[168],"fully":[170],"over":[173],"set":[175],"interlinked":[177],"sources.":[179],"We":[180],"implemented":[182],"prototype":[184],"BmQGen":[187],"system":[188],"evaluated":[190],"proposed":[192],"predicate":[198],"oriented":[199],"clustering":[200],"with":[201],"colorectal":[202],"surgical":[203],"cohort":[204],"Mayo":[207],"Clinic.":[208]},"counts_by_year":[{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-25T13:04:00.132906","created_date":"2025-10-10T00:00:00"}
