{"id":"https://openalex.org/W2221153099","doi":"https://doi.org/10.1109/bibm.2015.7359827","title":"A systems chemical biology approach to identify targets of antibacterial agents: A case study of Chelerythrine and Rhein","display_name":"A systems chemical biology approach to identify targets of antibacterial agents: A case study of Chelerythrine and Rhein","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2221153099","doi":"https://doi.org/10.1109/bibm.2015.7359827","mag":"2221153099"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359827","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359827","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114832713","display_name":"Lida Zhu","orcid":"https://orcid.org/0000-0001-8789-0058"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Li-Da Zhu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113708322","display_name":"Chang-Shou He","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang-Shou He","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075442836","display_name":"Ye-Mao Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye-Mao Liu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100742301","display_name":"Quan Yuan","orcid":"https://orcid.org/0000-0002-5163-2951"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Quan","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394844","display_name":"Jing Chen","orcid":"https://orcid.org/0000-0001-9481-9997"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Chen","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100659224","display_name":"Qiang Zhu","orcid":"https://orcid.org/0000-0003-0708-3016"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Zhu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025275790","display_name":"Qingye Zhang","orcid":"https://orcid.org/0000-0002-9596-590X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing-Ye Zhang","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100412608","display_name":"Hongyu Zhang","orcid":"https://orcid.org/0000-0002-8078-4401"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong-Yu Zhang","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5114832713"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11328588,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":null,"first_page":"1047","last_page":"1056"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12817","display_name":"Pharmacological Effects of Natural Compounds","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chelerythrine","display_name":"Chelerythrine","score":0.6940141320228577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5980311632156372},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.5483506321907043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5107886791229248},{"id":"https://openalex.org/keywords/natural-product","display_name":"Natural product","score":0.45633596181869507},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4398173689842224},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4372987151145935},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.42102983593940735},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.2621777355670929},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2608937621116638},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14202827215194702},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13198450207710266},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1124868392944336},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.07493901252746582}],"concepts":[{"id":"https://openalex.org/C2776108454","wikidata":"https://www.wikidata.org/wiki/Q5089853","display_name":"Chelerythrine","level":4,"score":0.6940141320228577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5980311632156372},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.5483506321907043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5107886791229248},{"id":"https://openalex.org/C2779396153","wikidata":"https://www.wikidata.org/wiki/Q901227","display_name":"Natural product","level":2,"score":0.45633596181869507},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4398173689842224},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4372987151145935},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.42102983593940735},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.2621777355670929},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2608937621116638},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14202827215194702},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13198450207710266},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1124868392944336},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.07493901252746582},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C195794163","wikidata":"https://www.wikidata.org/wiki/Q420877","display_name":"Protein kinase C","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2015.7359827","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359827","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.699999988079071,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W99176723","https://openalex.org/W1494494379","https://openalex.org/W1963512442","https://openalex.org/W1965700060","https://openalex.org/W1969290393","https://openalex.org/W1973423181","https://openalex.org/W1974809008","https://openalex.org/W1978370150","https://openalex.org/W1981150885","https://openalex.org/W1982991372","https://openalex.org/W1986191025","https://openalex.org/W1989552560","https://openalex.org/W1992162955","https://openalex.org/W1992442866","https://openalex.org/W1995105203","https://openalex.org/W1998686368","https://openalex.org/W2002534237","https://openalex.org/W2002649322","https://openalex.org/W2009326252","https://openalex.org/W2011968916","https://openalex.org/W2029370585","https://openalex.org/W2032694615","https://openalex.org/W2032917297","https://openalex.org/W2036658481","https://openalex.org/W2046451305","https://openalex.org/W2048767293","https://openalex.org/W2063184550","https://openalex.org/W2070709658","https://openalex.org/W2075952240","https://openalex.org/W2076945013","https://openalex.org/W2083271125","https://openalex.org/W2085719025","https://openalex.org/W2086121836","https://openalex.org/W2088545291","https://openalex.org/W2090136381","https://openalex.org/W2090192352","https://openalex.org/W2090745153","https://openalex.org/W2092443343","https://openalex.org/W2092601326","https://openalex.org/W2093364655","https://openalex.org/W2098766459","https://openalex.org/W2105924489","https://openalex.org/W2128482141","https://openalex.org/W2130833873","https://openalex.org/W2139632498","https://openalex.org/W2144968300","https://openalex.org/W2150642895","https://openalex.org/W2151031764","https://openalex.org/W2152301430","https://openalex.org/W2153904583","https://openalex.org/W2155237411","https://openalex.org/W2157737997"],"related_works":["https://openalex.org/W2091080204","https://openalex.org/W2077165473","https://openalex.org/W1986555849","https://openalex.org/W1992170829","https://openalex.org/W2003409953","https://openalex.org/W2079613256","https://openalex.org/W2894131129","https://openalex.org/W2064226629","https://openalex.org/W2106321013","https://openalex.org/W2377917111"],"abstract_inverted_index":{"Mycobacterium":[0],"tuberculosis":[1],"(MTB)":[2],"and":[3,10,17,33,63,95,105,123,143],"Staphylococcus":[4],"aureus":[5],"(STA)":[6],"are":[7,116],"very":[8],"common":[9],"complicated":[11],"diseases":[12],"that":[13,130],"infect":[14],"both":[15],"humans":[16],"animals.":[18],"The":[19,113,127],"emergence":[20],"of":[21,49,58,66,83,140],"multidrug-resistant":[22],"bacterium":[23],"represents":[24],"an":[25,97],"urgent":[26],"need":[27],"to":[28,46,70,157],"identify":[29,47],"new":[30],"drug":[31],"targets":[32,48,82,92,115,139],"therapeutic":[34],"drugs.":[35,87],"In":[36],"this":[37],"study,":[38],"we":[39,89],"propose":[40],"a":[41,106],"systems":[42],"chemical":[43,61],"biology":[44],"method":[45,53,78,132],"anti-bacterial":[50,108,141],"agents.":[51],"This":[52],"integrates":[54],"gene":[55],"expression":[56],"profiles":[57],"MTB":[59],"upon":[60],"treatment":[62],"prior":[64],"knowledge":[65],"protein-protein":[67],"interactions":[68],"(PPI)":[69],"predict":[71,90],"antibacterial":[72],"targets.":[73],"We":[74],"first":[75],"validate":[76],"the":[77,81,91,137],"by":[79,120],"examining":[80],"two":[84],"approved":[85],"anti-MTB":[86,98],"Then,":[88],"for":[93,110,135,163],"Chelerythrine":[94],"Rhein,":[96],"natural":[99,107],"product":[100],"extracted":[101],"from":[102],"Chelidonium":[103],"majus":[104],"agent":[109],"STA":[111],"respectively.":[112],"identified":[114],"further":[117],"evaluated":[118],"visually":[119],"molecular":[121,124],"docking":[122],"dynamics":[125],"simulation.":[126],"results":[128],"show":[129],"our":[131],"is":[133,155],"applicable":[134],"predicting":[136],"potential":[138],"agents":[142],"has":[144],"stable":[145],"performance":[146],"among":[147],"multiple":[148],"datasets":[149],"across":[150],"different":[151],"species.":[152],"Our":[153],"strategy":[154],"expected":[156],"be":[158],"used":[159],"in":[160],"target":[161],"identification":[162],"other":[164],"antibacterial.":[165]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
