{"id":"https://openalex.org/W2212905304","doi":"https://doi.org/10.1109/bibm.2015.7359668","title":"Fast alignment filtering of nanopore sequencing reads using locality-sensitive hashing","display_name":"Fast alignment filtering of nanopore sequencing reads using locality-sensitive hashing","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2212905304","doi":"https://doi.org/10.1109/bibm.2015.7359668","mag":"2212905304"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359668","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359668","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053736401","display_name":"Jeremy Wang","orcid":"https://orcid.org/0000-0002-0673-9418"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy R. Wang","raw_affiliation_strings":["Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091112024","display_name":"Corbin D. Jones","orcid":"https://orcid.org/0000-0001-7281-7130"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Corbin D. Jones","raw_affiliation_strings":["Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4518,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.66774958,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"127","last_page":"130"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7083120942115784},{"id":"https://openalex.org/keywords/locality-sensitive-hashing","display_name":"Locality-sensitive hashing","score":0.7010343074798584},{"id":"https://openalex.org/keywords/locality","display_name":"Locality","score":0.6597331762313843},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.6166269779205322},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.5907759666442871},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.2888546288013458},{"id":"https://openalex.org/keywords/hash-table","display_name":"Hash table","score":0.2834024131298065},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.12948423624038696},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11329019069671631},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.09294071793556213},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07826727628707886}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7083120942115784},{"id":"https://openalex.org/C74270461","wikidata":"https://www.wikidata.org/wiki/Q1625299","display_name":"Locality-sensitive hashing","level":4,"score":0.7010343074798584},{"id":"https://openalex.org/C2779808786","wikidata":"https://www.wikidata.org/wiki/Q6664603","display_name":"Locality","level":2,"score":0.6597331762313843},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.6166269779205322},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.5907759666442871},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2888546288013458},{"id":"https://openalex.org/C67388219","wikidata":"https://www.wikidata.org/wiki/Q207440","display_name":"Hash table","level":3,"score":0.2834024131298065},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.12948423624038696},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11329019069671631},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.09294071793556213},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07826727628707886},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2015.7359668","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359668","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6499999761581421}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W344138311","https://openalex.org/W1579534339","https://openalex.org/W1635391495","https://openalex.org/W1974640383","https://openalex.org/W1983403167","https://openalex.org/W2026861756","https://openalex.org/W2058507386","https://openalex.org/W2087064593","https://openalex.org/W2132069633","https://openalex.org/W2137759177","https://openalex.org/W2162055898","https://openalex.org/W2189047836","https://openalex.org/W6679663036"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4200050032","https://openalex.org/W2749851556","https://openalex.org/W2765793069","https://openalex.org/W2324462508","https://openalex.org/W2000601968","https://openalex.org/W2144265691","https://openalex.org/W2033383639","https://openalex.org/W3108918257","https://openalex.org/W3016124764"],"abstract_inverted_index":{"We":[0,14,55],"introduce":[1],"a":[2,118],"novel":[3],"method":[4,20,38,63],"to":[5,74],"efficiently":[6],"filter":[7],"pairwise":[8,76],"alignments":[9,78],"between":[10,107],"long,":[11],"high-error":[12],"reads.":[13],"demonstrate":[15],"the":[16,59,67,90,105,123],"efficiency":[17],"of":[18,45,61,92],"our":[19,62],"on":[21,117],"long":[22],"read":[23,77],"datasets":[24],"produced":[25],"by":[26,42],"Oxford":[27],"Nanopore":[28],"Technologies'":[29],"MinION":[30,124],"sequencer":[31],"and":[32,51,88,110,115],"Pacific":[33],"Biosciences'":[34],"RS":[35],"II.":[36],"Our":[37,101],"outperforms":[39],"existing":[40],"methods":[41],"an":[43],"order":[44],"magnitude":[46],"in":[47],"both":[48,113],"CPU":[49],"runtime":[50],"main":[52],"memory":[53],"required.":[54],"further":[56],"show":[57],"that":[58],"performance":[60],"scales":[64],"linearly":[65],"with":[66],"total":[68],"input":[69],"sequence":[70,94,108],"data,":[71],"allowing":[72],"us":[73],"perform":[75],"without":[79],"large":[80],"cluster":[81],"or":[82],"cloud":[83],"infrastructure":[84],"for":[85,96],"smaller":[86],"genomes":[87,98],"make":[89],"alignment":[91],"whole-genome":[93],"tractable":[95],"larger":[97],"including":[99],"humans.":[100],"approach":[102],"helps":[103],"bridge":[104],"gap":[106],"production":[109],"analysis,":[111],"enabling":[112],"sequencing":[114],"assembly":[116],"commodity":[119],"laptop":[120],"computer":[121],"using":[122],"system.":[125]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}