{"id":"https://openalex.org/W2202150796","doi":"https://doi.org/10.1109/bibm.2015.7359657","title":"A new algorithm for \u201cthe LCS problem\u201d with application in compressing genome resequencing data","display_name":"A new algorithm for \u201cthe LCS problem\u201d with application in compressing genome resequencing data","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2202150796","doi":"https://doi.org/10.1109/bibm.2015.7359657","mag":"2202150796"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2015.7359657","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359657","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://researchrepository.wvu.edu/faculty_publications/1952","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000545508","display_name":"Richard Beal","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Richard Beal","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050981415","display_name":"Tazin Afrin","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tazin Afrin","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113706279","display_name":"Aliya Farheen","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aliya Farheen","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032670797","display_name":"Don Adjeroh","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Don Adjeroh","raw_affiliation_strings":["Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, US","institution_ids":["https://openalex.org/I12097938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000545508"],"corresponding_institution_ids":["https://openalex.org/I12097938"],"apc_list":null,"apc_paid":null,"fwci":3.5608,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.93746646,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"69","last_page":"74"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/byte","display_name":"Byte","score":0.8362463712692261},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7013897895812988},{"id":"https://openalex.org/keywords/longest-common-subsequence-problem","display_name":"Longest common subsequence problem","score":0.6120148301124573},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5861178040504456},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.46617841720581055},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4493190050125122},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.37585076689720154},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3722477853298187},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0950227677822113}],"concepts":[{"id":"https://openalex.org/C43364308","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Byte","level":2,"score":0.8362463712692261},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7013897895812988},{"id":"https://openalex.org/C120098539","wikidata":"https://www.wikidata.org/wiki/Q141001","display_name":"Longest common subsequence problem","level":2,"score":0.6120148301124573},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5861178040504456},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.46617841720581055},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4493190050125122},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.37585076689720154},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3722477853298187},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0950227677822113},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2015.7359657","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2015.7359657","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:researchrepository.wvu.edu:faculty_publications-2880","is_oa":true,"landing_page_url":"https://researchrepository.wvu.edu/faculty_publications/1952","pdf_url":null,"source":{"id":"https://openalex.org/S4306402612","display_name":"The Research Repository @ WVU (West Virginia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12097938","host_organization_name":"West Virginia University","host_organization_lineage":["https://openalex.org/I12097938"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty & Staff Scholarship","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:researchrepository.wvu.edu:faculty_publications-2880","is_oa":true,"landing_page_url":"https://researchrepository.wvu.edu/faculty_publications/1952","pdf_url":null,"source":{"id":"https://openalex.org/S4306402612","display_name":"The Research Repository @ WVU (West Virginia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12097938","host_organization_name":"West Virginia University","host_organization_lineage":["https://openalex.org/I12097938"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty & Staff Scholarship","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W73629738","https://openalex.org/W938539187","https://openalex.org/W1488229309","https://openalex.org/W1599305879","https://openalex.org/W1737647356","https://openalex.org/W1884272081","https://openalex.org/W1965743524","https://openalex.org/W1990061958","https://openalex.org/W1998127289","https://openalex.org/W2000466469","https://openalex.org/W2006435065","https://openalex.org/W2011632873","https://openalex.org/W2027506564","https://openalex.org/W2028886091","https://openalex.org/W2038180954","https://openalex.org/W2038739952","https://openalex.org/W2040176884","https://openalex.org/W2046505748","https://openalex.org/W2053244702","https://openalex.org/W2084221733","https://openalex.org/W2087064593","https://openalex.org/W2089566450","https://openalex.org/W2093080729","https://openalex.org/W2108619226","https://openalex.org/W2111044311","https://openalex.org/W2130200371","https://openalex.org/W2131106408","https://openalex.org/W2134814259","https://openalex.org/W2142003566","https://openalex.org/W2142414282","https://openalex.org/W2159084616","https://openalex.org/W2161151382","https://openalex.org/W2165654401","https://openalex.org/W2323180197","https://openalex.org/W4372046852"],"related_works":["https://openalex.org/W2279684808","https://openalex.org/W3137911940","https://openalex.org/W3217304749","https://openalex.org/W2894932706","https://openalex.org/W2066142713","https://openalex.org/W3044766408","https://openalex.org/W2767606877","https://openalex.org/W2582968398","https://openalex.org/W4223446368","https://openalex.org/W4232517363"],"abstract_inverted_index":{"The":[0],"longest":[1],"common":[2],"subsequence":[3],"(LCS)":[4],"problem":[5,9],"is":[6,103],"a":[7,31],"classical":[8],"in":[10],"computer":[11],"science,":[12],"and":[13,88,91,96],"forms":[14],"the":[15,18,35,47,50,54,58,70,80,113],"basis":[16],"of":[17,49,84],"current":[19],"best-performing":[20],"reference-based":[21,43,115],"compression":[22,44,101,116],"schemes":[23],"for":[24,34],"genome":[25,61,71],"resequencing":[26],"data.":[27],"First,":[28],"we":[29,39],"present":[30],"new":[32],"algorithm":[33],"LCS":[36,55],"problem.":[37],"Then,":[38],"introduce":[40],"an":[41],"LCS-motivated":[42],"scheme":[45,68],"using":[46],"components":[48],"LCS,":[51],"rather":[52],"than":[53,110],"itself.":[56],"For":[57],"Homo":[59],"sapiens":[60],"(original":[62],"size":[63],"3,080,436,051":[64],"bytes),":[65],"our":[66,100],"proposed":[67],"compressed":[69],"to":[72,106],"5,267,656":[73],"bytes.":[74],"This":[75],"can":[76],"be":[77],"compared":[78],"with":[79],"previous":[81],"best":[82],"results":[83],"19,666,791":[85],"bytes":[86,93],"(Wang":[87],"Zhang,":[89],"2011)":[90],"17,971,030":[92],"(Pinho,":[94],"Pratas,":[95],"Garcia,":[97],"2011).":[98],"Thus,":[99],"ratio":[102],"about":[104],"3.73":[105],"3.41":[107],"times":[108],"better":[109],"those":[111],"from":[112],"state-of-the-art":[114],"algorithms.":[117]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
