{"id":"https://openalex.org/W1963595418","doi":"https://doi.org/10.1109/bibm.2014.6999383","title":"Estimating cancer gene pathway proximity using network interaction","display_name":"Estimating cancer gene pathway proximity using network interaction","publication_year":2014,"publication_date":"2014-11-01","ids":{"openalex":"https://openalex.org/W1963595418","doi":"https://doi.org/10.1109/bibm.2014.6999383","mag":"1963595418"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2014.6999383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026785372","display_name":"Rama Srikanth Mallavarapu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Rama Srikanth Mallavarapu","raw_affiliation_strings":["SAIT-India, Samsung R&D Institute India, Bangalore","SAIT-India, Samsung R&D Institute India - Bangalore"],"affiliations":[{"raw_affiliation_string":"SAIT-India, Samsung R&D Institute India, Bangalore","institution_ids":["https://openalex.org/I4210139030"]},{"raw_affiliation_string":"SAIT-India, Samsung R&D Institute India - Bangalore","institution_ids":["https://openalex.org/I4210139030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009861775","display_name":"TaeJin Ahn","orcid":"https://orcid.org/0000-0001-5165-2744"},"institutions":[{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"TaeJin Ahn","raw_affiliation_strings":["Samsung Electronics, Samsung Biomedical Research Institute, South Korea","Samsung Biomedical Research Institute, Samsung Electronics, South Korea#TAB#"],"affiliations":[{"raw_affiliation_string":"Samsung Electronics, Samsung Biomedical Research Institute, South Korea","institution_ids":["https://openalex.org/I2250650973"]},{"raw_affiliation_string":"Samsung Biomedical Research Institute, Samsung Electronics, South Korea#TAB#","institution_ids":["https://openalex.org/I2250650973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112740343","display_name":"Subhankar Mukherjee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhankar Mukherjee","raw_affiliation_strings":["Samsung R&D Institute India, Bangalore"],"affiliations":[{"raw_affiliation_string":"Samsung R&D Institute India, Bangalore","institution_ids":["https://openalex.org/I4210139030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021970132","display_name":"Ajit Bopardikar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ajit S Bopardikar","raw_affiliation_strings":["SAIT-India, Samsung R&D Institute India, Bangalore","SAIT-India, Samsung R&D Institute India - Bangalore"],"affiliations":[{"raw_affiliation_string":"SAIT-India, Samsung R&D Institute India, Bangalore","institution_ids":["https://openalex.org/I4210139030"]},{"raw_affiliation_string":"SAIT-India, Samsung R&D Institute India - Bangalore","institution_ids":["https://openalex.org/I4210139030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103476714","display_name":"Garima Agarwal","orcid":"https://orcid.org/0000-0003-4551-8244"},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Garima Agarwal","raw_affiliation_strings":["SAIT-India, Samsung R&D Institute India, Bangalore","SAIT-India, Samsung R&D Institute India - Bangalore"],"affiliations":[{"raw_affiliation_string":"SAIT-India, Samsung R&D Institute India, Bangalore","institution_ids":["https://openalex.org/I4210139030"]},{"raw_affiliation_string":"SAIT-India, Samsung R&D Institute India - Bangalore","institution_ids":["https://openalex.org/I4210139030"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100643662","display_name":"Taesung Park","orcid":"https://orcid.org/0000-0002-8294-590X"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Taesung Park","raw_affiliation_strings":["Dep. of Statistics, Seoul National University, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Dep. of Statistics, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026785372"],"corresponding_institution_ids":["https://openalex.org/I4210139030"],"apc_list":null,"apc_paid":null,"fwci":0.2789,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.57366013,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"32","issue":null,"first_page":"27","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.92906653881073},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5755260586738586},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5365955829620361},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.443627268075943},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4370715618133545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42438262701034546},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40999409556388855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35945504903793335},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3582232594490051},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21444645524024963},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16613104939460754},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.13249337673187256}],"concepts":[{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.92906653881073},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5755260586738586},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5365955829620361},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.443627268075943},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4370715618133545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42438262701034546},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40999409556388855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35945504903793335},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3582232594490051},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21444645524024963},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16613104939460754},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.13249337673187256}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2014.6999383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7599999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W135431704","https://openalex.org/W1992045522","https://openalex.org/W1999086631","https://openalex.org/W2017568254","https://openalex.org/W2024775366","https://openalex.org/W2100714130","https://openalex.org/W2104085672","https://openalex.org/W2105309532","https://openalex.org/W2107710781","https://openalex.org/W2121149237","https://openalex.org/W2123083582","https://openalex.org/W2124637492","https://openalex.org/W2136482324","https://openalex.org/W2158955394","https://openalex.org/W2163563958","https://openalex.org/W2275769305","https://openalex.org/W4232763934","https://openalex.org/W6605529585","https://openalex.org/W6694301884"],"related_works":["https://openalex.org/W2012646486","https://openalex.org/W2076372398","https://openalex.org/W2572831998","https://openalex.org/W4383375656","https://openalex.org/W2991309067","https://openalex.org/W2922387668","https://openalex.org/W2591869837","https://openalex.org/W3157124693","https://openalex.org/W4308461145","https://openalex.org/W3208159643"],"abstract_inverted_index":{"It":[0],"is":[1,45],"known":[2],"that":[3],"the":[4],"gene":[5,50],"level":[6,61],"aberrations":[7,32],"for":[8,26],"a":[9,17,19,41,57],"given":[10],"cancer":[11,93],"could":[12],"vary":[13],"across":[14,38],"patients.":[15,39],"As":[16],"result,":[18],"single":[20],"therapy":[21],"may":[22,33],"not":[23],"be":[24,84],"suitable":[25],"every":[27],"patient.":[28],"However,":[29],"these":[30,82],"genetic":[31],"occur":[34],"in":[35,104,107],"similar":[36],"pathways":[37,64],"Therefore":[40],"study":[42],"at":[43,49,59],"pathway/subnetwork":[44],"more":[46],"effective":[47],"than":[48],"level.":[51],"In":[52],"this":[53,60],"paper,":[54],"we":[55,74],"propose":[56,75],"method":[58],"to":[62,86,109],"classify":[63,89],"(sub-networks)":[65],"as":[66,94],"functionally":[67,70],"coupled":[68],"and":[69,88],"independent.":[71],"For":[72],"this,":[73],"novel":[76],"interaction":[77],"measures.":[78],"We":[79],"show":[80],"how":[81],"can":[83],"used":[85],"link":[87],"subnetworks":[90],"using":[91],"breast":[92],"an":[95,101],"example.":[96],"Such":[97],"methods":[98],"will":[99],"play":[100],"important":[102],"role":[103],"patient":[105],"stratification":[106],"order":[108],"develop":[110],"personalized":[111],"treatment":[112],"options.":[113]},"counts_by_year":[{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
