{"id":"https://openalex.org/W2083039260","doi":"https://doi.org/10.1109/bibm.2014.6999369","title":"Visual data exploration of soil bacteria susceptible to engineered nanomaterials","display_name":"Visual data exploration of soil bacteria susceptible to engineered nanomaterials","publication_year":2014,"publication_date":"2014-11-01","ids":{"openalex":"https://openalex.org/W2083039260","doi":"https://doi.org/10.1109/bibm.2014.6999369","mag":"2083039260"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2014.6999369","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999369","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100346482","display_name":"Rong Liu","orcid":"https://orcid.org/0000-0002-7320-3672"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rong Liu","raw_affiliation_strings":["Center for Environmental Implications of Nanotechnology, University of California, Los Angeles, USA","Center for Environmental Implications of Nanotechnology, Institute of the Environment and Sustainability, University of California, Los Angeles, USA"],"affiliations":[{"raw_affiliation_string":"Center for Environmental Implications of Nanotechnology, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Center for Environmental Implications of Nanotechnology, Institute of the Environment and Sustainability, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004697086","display_name":"Patricia A. Holden","orcid":"https://orcid.org/0000-0002-6777-5359"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patricia A. Holden","raw_affiliation_strings":["Earth Research Institute Center for Environmental, Implications of Nanotechnology University of California, Santa Barbara, USA","Earth Research Institute, Bren School of Environmental Science and Management, Center for Environmental Implications of Nanotechnology, University of California, Santa Barbara, USA"],"affiliations":[{"raw_affiliation_string":"Earth Research Institute Center for Environmental, Implications of Nanotechnology University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Earth Research Institute, Bren School of Environmental Science and Management, Center for Environmental Implications of Nanotechnology, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066493950","display_name":"Yuan Ge","orcid":"https://orcid.org/0000-0003-0234-5638"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Ge","raw_affiliation_strings":["Earth Research Institute Bren School of Environmental Science and Management, University of California, Santa Barbara, USA","Earth Research Institute, Center for Environmental Implications of Nanotechnology, University of California, Santa Barbara, USA"],"affiliations":[{"raw_affiliation_string":"Earth Research Institute Bren School of Environmental Science and Management, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Earth Research Institute, Center for Environmental Implications of Nanotechnology, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059913443","display_name":"Yoram Cohen","orcid":"https://orcid.org/0000-0002-0756-4699"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoram Cohen","raw_affiliation_strings":["Chemical and Biomolecular Engineering Department, University of California, Los Angeles, USA","Chemical and Biomolecular Engineering Department, Center for Environmental Implications of Nanotechnology, University of California, Los Angeles, USA"],"affiliations":[{"raw_affiliation_string":"Chemical and Biomolecular Engineering Department, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Chemical and Biomolecular Engineering Department, Center for Environmental Implications of Nanotechnology, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100346482"],"corresponding_institution_ids":["https://openalex.org/I161318765"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06201497,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"86","issue":null,"first_page":"18","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.5906752347946167},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5868473052978516},{"id":"https://openalex.org/keywords/soil-bacteria","display_name":"Soil bacteria","score":0.5453937649726868},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5048409104347229},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.43704622983932495},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4218313694000244},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4127448797225952},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.39912599325180054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3798794746398926},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33606651425361633},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27889370918273926},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2664482593536377},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22207492589950562},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.19620534777641296},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.10315898060798645},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.10167405009269714}],"concepts":[{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.5906752347946167},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5868473052978516},{"id":"https://openalex.org/C2994279237","wikidata":"https://www.wikidata.org/wiki/Q7554937","display_name":"Soil bacteria","level":3,"score":0.5453937649726868},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5048409104347229},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.43704622983932495},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4218313694000244},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4127448797225952},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.39912599325180054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3798794746398926},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33606651425361633},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27889370918273926},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2664482593536377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22207492589950562},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.19620534777641296},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.10315898060798645},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.10167405009269714},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2014.6999369","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999369","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.7300000190734863}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W586587460","https://openalex.org/W1496357020","https://openalex.org/W1596290048","https://openalex.org/W1647225459","https://openalex.org/W1984983329","https://openalex.org/W1985410598","https://openalex.org/W1988494823","https://openalex.org/W1991310235","https://openalex.org/W2009351013","https://openalex.org/W2035169284","https://openalex.org/W2037360063","https://openalex.org/W2042342613","https://openalex.org/W2047717547","https://openalex.org/W2056660923","https://openalex.org/W2061047564","https://openalex.org/W2066768558","https://openalex.org/W2072608150","https://openalex.org/W2075480465","https://openalex.org/W2080130977","https://openalex.org/W2092929703","https://openalex.org/W2093996914","https://openalex.org/W2102736418","https://openalex.org/W2106412044","https://openalex.org/W2107235350","https://openalex.org/W2116781551","https://openalex.org/W2117326659","https://openalex.org/W2122622888","https://openalex.org/W2138111878","https://openalex.org/W2138575451","https://openalex.org/W2140190241","https://openalex.org/W2143330935","https://openalex.org/W2145857667","https://openalex.org/W2145979309","https://openalex.org/W2152777432","https://openalex.org/W2156239678","https://openalex.org/W2171438600","https://openalex.org/W2239419632","https://openalex.org/W2317346336","https://openalex.org/W2335367021","https://openalex.org/W2478057642","https://openalex.org/W3100427564","https://openalex.org/W3106063097","https://openalex.org/W3215037115","https://openalex.org/W4234837687","https://openalex.org/W4249875616","https://openalex.org/W6681313308","https://openalex.org/W6685201559"],"related_works":["https://openalex.org/W2371352078","https://openalex.org/W2953461625","https://openalex.org/W2077383796","https://openalex.org/W2080136900","https://openalex.org/W2999799752","https://openalex.org/W2372768926","https://openalex.org/W2054458431","https://openalex.org/W2115167491","https://openalex.org/W2567825307","https://openalex.org/W3013576436"],"abstract_inverted_index":{"The":[0,84,111],"impact":[1,91],"of":[2,33,44,61,68,86,126],"ZnO":[3,69],"and":[4,19,31,56,70,99,124,135],"TiO":[5,71],"<inf":[6,72],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[7,73],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">2</inf>":[8,74],"nanoparticles":[9],"(NPs)":[10],"on":[11,128],"soil":[12,46,81,129],"bacterial":[13,34,47,82,130],"communities":[14,131],"for":[15,89],"different":[16,108],"exposure":[17],"times":[18],"NP":[20,30,90,104],"doses":[21],"was":[22,93],"explored":[23],"via":[24],"data":[25,127],"visualization":[26],"techniques.":[27],"Interrelationships":[28],"between":[29,103],"responses":[32],"taxa":[35,48],"were":[36],"illustrated":[37],"by":[38,95],"bipartite":[39],"graphs,":[40],"allowing":[41],"fast":[42],"identification":[43],"important":[45],"that":[49,115],"are":[50],"susceptible":[51],"to":[52,133],"NPs.":[53],"Hierarchical":[54],"clustering":[55],"nonmetric":[57],"multi-dimensional":[58],"scaling":[59],"(NMDS)":[60],"the":[62,96,100],"dataset":[63],"demonstrated":[64,94],"that,":[65],"high":[66],"dose":[67],"NPs":[75,134],"caused":[76],"significant":[77],"compositional":[78],"changes":[79],"in":[80,121],"communities.":[83],"suitability":[85],"family":[87],"level":[88],"assessment":[92],"simplified":[97],"NMDSs":[98],"distance":[101],"correlation":[102],"impacts":[105],"summarized":[106],"at":[107],"taxonomic":[109],"levels.":[110],"present":[112],"study":[113],"demonstrates":[114],"visual":[116],"exploration":[117],"could":[118],"potentially":[119],"assist":[120],"knowledge":[122],"discovery":[123],"interpretation":[125],"exposed":[132],"thus":[136],"evaluate":[137],"potential":[138],"environmental":[139],"impacts.":[140]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
