{"id":"https://openalex.org/W1981385425","doi":"https://doi.org/10.1109/bibm.2014.6999291","title":"Identification of protein complexes and functional modules in integrated PPI networks","display_name":"Identification of protein complexes and functional modules in integrated PPI networks","publication_year":2014,"publication_date":"2014-11-01","ids":{"openalex":"https://openalex.org/W1981385425","doi":"https://doi.org/10.1109/bibm.2014.6999291","mag":"1981385425"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2014.6999291","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999291","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067965165","display_name":"Yang Guo","orcid":"https://orcid.org/0000-0003-0821-9755"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Guo","raw_affiliation_strings":["Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009944817","display_name":"Xuequn Shang","orcid":"https://orcid.org/0000-0002-7249-8210"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100941677","display_name":"Qing-Ping Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingping Zhu","raw_affiliation_strings":["Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016207241","display_name":"Mingkui Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingkui Huang","raw_affiliation_strings":["Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041615627","display_name":"Zhanhuai Li","orcid":"https://orcid.org/0009-0003-6936-5745"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhanhuai Li","raw_affiliation_strings":["Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi, P. R. China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Computer Science and Technology, School of Computer Science, Northwestern Polytechnical University, Xi'an, Shaanxi, 710129, P. R. China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"8","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7880282402038574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6026038527488708},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.419899046421051},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13096413016319275}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7880282402038574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6026038527488708},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.419899046421051},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13096413016319275},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2014.6999291","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999291","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2007921075","https://openalex.org/W2010950448","https://openalex.org/W2012852001","https://openalex.org/W2014879346","https://openalex.org/W2032672182","https://openalex.org/W2036799174","https://openalex.org/W2066192175","https://openalex.org/W2082565035","https://openalex.org/W2085658677","https://openalex.org/W2107067224","https://openalex.org/W2121564430","https://openalex.org/W2122037201","https://openalex.org/W2136850043","https://openalex.org/W2137917513","https://openalex.org/W2138003801","https://openalex.org/W2141144378","https://openalex.org/W2144393227","https://openalex.org/W2152495216","https://openalex.org/W2153156148","https://openalex.org/W2156499012","https://openalex.org/W2160313295","https://openalex.org/W2162032011","https://openalex.org/W2164928285","https://openalex.org/W2168264491","https://openalex.org/W2169805130","https://openalex.org/W4236956086"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Mining":[0],"the":[1,16,26,36,40,54,73,77,124,161,166,170,181,185,193,210,240,268,277],"protein":[2,22,82,96,112,148,211,237,262],"complexes":[3,83,97,149,212,263],"and":[4,21,84,98,137,173,200,220,239,264,267],"functional":[5,85,99,182,221,242,250,265],"modules":[6,183,243],"from":[7],"protein-protein":[8],"interaction":[9],"(PPI)":[10],"networks":[11,38,79,126],"is":[12,69,102,144],"vital":[13],"to":[14,60,63,71,80,104,122,146,179,208,259],"understand":[15],"mechanism":[17],"of":[18,25,35,56,158,195,249,279],"cellular":[19,47,66],"components":[20],"functions.":[23,67],"Most":[24],"proposed":[27,253],"methods":[28,91],"had":[29],"solely":[30],"focused":[31],"on":[32,218],"static":[33],"properties":[34],"PPI":[37,42,78,125,152,162,171,186,205],"since":[39,108],"available":[41],"data":[43,136,199,203,206],"are":[44,49,58,110,244],"static.":[45],"However,":[46],"systems":[48],"highly":[50],"dynamic.":[51],"That":[52],"is,":[53],"interactions":[55],"proteins":[57,159],"responsive":[59],"environmental":[61],"cues":[62],"accomplish":[64],"diverse":[65],"It":[68,101],"important":[70,103],"consider":[72],"dynamic":[74,128],"inherent":[75],"within":[76],"identify":[81,147,165],"modules.":[86,100],"In":[87,114],"addition,":[88],"most":[89],"computational":[90],"did":[92],"not":[93],"distinguish":[94,105,260],"between":[95,106,261],"them":[107],"they":[109],"different":[111],"organizations.":[113],"this":[115],"paper,":[116],"we":[117,164],"propose":[118],"a":[119,176,256],"novel":[120],"framework":[121,254],"analyze":[123],"in":[127,150,160,169,184,223,235,247],"conditions":[129],"by":[130],"integrating":[131],"time-series":[132],"gene":[133,197],"expression":[134,198],"profiles":[135],"subcelluar":[138,201],"localization":[139,202],"data.":[140],"The":[141,188,252],"algorithm,":[142,229],"CBMI,":[143,230],"developed":[145,269],"integrated":[151],"networks.":[153,187],"By":[154],"investigating":[155],"multiple":[156],"perspectives":[157],"networks,":[163,172],"\u201cdynamic\u201d":[167],"hubs":[168],"then":[174],"present":[175],"new":[177,257],"method":[178],"discover":[180],"experimental":[189],"results":[190],"show":[191],"that":[192,227],"integration":[194],"temporal":[196],"with":[204],"contributes":[207],"extracting":[209],"more":[213],"precisely.":[214],"Comprehensive":[215],"evaluations":[216],"based":[217],"f-measure":[219],"annotations":[222],"MIPS":[224],"database":[225],"reveal":[226],"our":[228],"outperforms":[231],"other":[232],"previous":[233],"algorithms":[234,270],"identifying":[236],"complexes,":[238],"detected":[241],"statistically":[245],"significant":[246],"terms":[248],"annotations.":[251],"provides":[255],"clue":[258],"modules,":[266],"can":[271],"be":[272],"an":[273],"effective":[274],"technique":[275],"for":[276],"identification":[278],"them.":[280]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
