{"id":"https://openalex.org/W1996583560","doi":"https://doi.org/10.1109/bibm.2014.6999279","title":"Correlating interactions with gene expressions to detect protein complexes in protein interaction networks","display_name":"Correlating interactions with gene expressions to detect protein complexes in protein interaction networks","publication_year":2014,"publication_date":"2014-11-01","ids":{"openalex":"https://openalex.org/W1996583560","doi":"https://doi.org/10.1109/bibm.2014.6999279","mag":"1996583560"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2014.6999279","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999279","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017776842","display_name":"Huaxiong Yao","orcid":"https://orcid.org/0000-0002-2864-4487"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huaxiong Yao","raw_affiliation_strings":["School of Computer Science Central China Normal University, Wuhan, China","School of Computer Science, Central China Normal University Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer Science, Central China Normal University Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032137024","display_name":"Mengxiao Cui","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengxiao Cui","raw_affiliation_strings":["School of Computer Science Central China Normal University, Wuhan, China","School of Computer Science, Central China Normal University Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer Science, Central China Normal University Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100318311","display_name":"Wei Li","orcid":"https://orcid.org/0000-0002-9186-1142"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["School of Computer Science Central China Normal University, Wuhan, China","School of Computer Science, Central China Normal University Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer Science, Central China Normal University Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100389383","display_name":"Ziwei Wang","orcid":"https://orcid.org/0000-0003-3392-5483"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziwei Wang","raw_affiliation_strings":["School of Computer Science Central China Normal University, Wuhan, China","School of Computer Science, Central China Normal University Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer Science, Central China Normal University Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057349004","display_name":"Yuxiang Zhu","orcid":"https://orcid.org/0000-0002-4823-9948"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxiang Zhu","raw_affiliation_strings":["School of Computer Science Central China Normal University, Wuhan, China","School of Computer Science, Central China Normal University Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer Science, Central China Normal University Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017776842"],"corresponding_institution_ids":["https://openalex.org/I40963666"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.06295904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"417","issue":null,"first_page":"34","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6322594881057739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6272261142730713},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.4959617555141449},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4448358416557312},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.42675501108169556},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.404438316822052},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3530207872390747},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20988434553146362},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1537812352180481},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09316131472587585}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6322594881057739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6272261142730713},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.4959617555141449},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4448358416557312},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.42675501108169556},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.404438316822052},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3530207872390747},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20988434553146362},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1537812352180481},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09316131472587585},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2014.6999279","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999279","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W266412873","https://openalex.org/W1545841086","https://openalex.org/W1974555355","https://openalex.org/W1980085379","https://openalex.org/W1991561295","https://openalex.org/W2018966815","https://openalex.org/W2023077619","https://openalex.org/W2056622279","https://openalex.org/W2075717456","https://openalex.org/W2079007492","https://openalex.org/W2079574756","https://openalex.org/W2082201811","https://openalex.org/W2091254101","https://openalex.org/W2106336008","https://openalex.org/W2107067224","https://openalex.org/W2113654464","https://openalex.org/W2128450820","https://openalex.org/W2132582966","https://openalex.org/W2133178320","https://openalex.org/W2144273135","https://openalex.org/W2155019453","https://openalex.org/W2155142785","https://openalex.org/W2165520746","https://openalex.org/W2167883838","https://openalex.org/W2486709351","https://openalex.org/W6672967564"],"related_works":["https://openalex.org/W3158538495","https://openalex.org/W2045815042","https://openalex.org/W2092226129","https://openalex.org/W2913619905","https://openalex.org/W3125758369","https://openalex.org/W2375898439","https://openalex.org/W2069382761","https://openalex.org/W2028287801","https://openalex.org/W2264548338","https://openalex.org/W4385174200"],"abstract_inverted_index":{"In":[0],"protein-protein":[1],"interaction":[2,67],"networks,":[3],"proteins":[4],"combine":[5],"into":[6],"macromolecular":[7],"complexes":[8,64],"to":[9,47,50,61,89],"execute":[10],"essential":[11],"functions":[12],"in":[13,52,119],"the":[14,23,58],"cells,":[15],"such":[16],"as":[17,76],"replication,":[18],"transcription,":[19],"protein":[20,63,66,91],"transport.":[21],"Considering":[22],"certain":[24],"rate":[25],"of":[26,79,106],"false":[27,30],"positive":[28],"and":[29,40,43,83,97,103,122],"negative":[31],"interactions,":[32],"we":[33,56],"take":[34],"a":[35,72,80,86,90],"confidence":[36],"probability":[37],"on":[38],"interactions":[39,42],"correlate":[41],"gene":[44],"expression":[45],"data":[46],"assign":[48],"weights":[49],"edges":[51],"PPI":[53],"networks.":[54,68],"Then":[55],"propose":[57],"CIGE":[59],"algorithm":[60,70,114],"detecting":[62],"from":[65],"Our":[69],"takes":[71],"maximal":[73],"full-connected":[74],"sub-graph":[75],"core":[77,101,107],"graph":[78,102],"seed":[81],"node,":[82],"decides":[84],"whether":[85],"node":[87],"belongs":[88],"complex":[92],"through":[93],"judging":[94],"in-module":[95],"weight":[96,99],"out-module":[98],"between":[100],"nodes":[104],"out":[105],"graph.":[108],"Experiment":[109],"results":[110],"show":[111],"that":[112],"our":[113],"has":[115],"an":[116],"excellent":[117],"performance":[118],"both":[120],"accuracy":[121],"hit":[123],"rate.":[124]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
