{"id":"https://openalex.org/W2962760297","doi":"https://doi.org/10.1109/bibm.2014.6999135","title":"Commet: Comparing and combining multiple metagenomic datasets","display_name":"Commet: Comparing and combining multiple metagenomic datasets","publication_year":2014,"publication_date":"2014-11-01","ids":{"openalex":"https://openalex.org/W2962760297","doi":"https://doi.org/10.1109/bibm.2014.6999135","mag":"2962760297"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2014.6999135","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999135","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047666318","display_name":"Nicolas Maillet","orcid":null},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Nicolas Maillet","raw_affiliation_strings":["INRIA / IRISA-UMR CNRS 6074, EPI GenScale, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA / IRISA-UMR CNRS 6074, EPI GenScale, Rennes, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070523486","display_name":"Guillaume Collet","orcid":"https://orcid.org/0000-0002-0355-563X"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Collet","raw_affiliation_strings":["INRIA / IRISA-UMR CNRS 6074, EPI Dyliss, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA / IRISA-UMR CNRS 6074, EPI Dyliss, Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1326498283","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028989615","display_name":"Thomas Vannier","orcid":"https://orcid.org/0000-0002-9401-8839"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210115028","display_name":"Genoscope","ror":"https://ror.org/028pnqf58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210115028"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Vannier","raw_affiliation_strings":["CEA Genoscope / CNRS UMR 8030 / Universit\u00e9 d\u2019\u00c9vry, Evry, France","CEA Genoscope / CNRS UMR 8030 / Universit\u00e9 d'\u00c9vry, Evry, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEA Genoscope / CNRS UMR 8030 / Universit\u00e9 d\u2019\u00c9vry, Evry, France","institution_ids":["https://openalex.org/I2738703131","https://openalex.org/I4210115028","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CEA Genoscope / CNRS UMR 8030 / Universit\u00e9 d'\u00c9vry, Evry, France","institution_ids":["https://openalex.org/I2738703131","https://openalex.org/I4210115028","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008215565","display_name":"Dominique Lavenier","orcid":"https://orcid.org/0000-0003-2557-680X"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dominique Lavenier","raw_affiliation_strings":["INRIA / IRISA-UMR CNRS 6074, EPI GenScale, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA / IRISA-UMR CNRS 6074, EPI GenScale, Rennes, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012897398","display_name":"Pierre Peterlongo","orcid":"https://orcid.org/0000-0003-0776-6407"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Peterlongo","raw_affiliation_strings":["INRIA / IRISA-UMR CNRS 6074, EPI GenScale, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA / IRISA-UMR CNRS 6074, EPI GenScale, Rennes, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5047666318"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2802519937"],"apc_list":null,"apc_paid":null,"fwci":3.1301,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.92451927,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"94","last_page":"98"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8591001033782959},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6233255863189697},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33819347620010376},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13916531205177307}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8591001033782959},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6233255863189697},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33819347620010376},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13916531205177307},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2014.6999135","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2014.6999135","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-01080050v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01080050","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE BIBM 2014, Nov 2014, Belfast, United Kingdom","raw_type":"Conference papers"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1964805664","https://openalex.org/W1983169073","https://openalex.org/W1985479482","https://openalex.org/W1989348205","https://openalex.org/W1995875735","https://openalex.org/W2033002674","https://openalex.org/W2055043387","https://openalex.org/W2057215967","https://openalex.org/W2057970678","https://openalex.org/W2060797027","https://openalex.org/W2062866524","https://openalex.org/W2082650848","https://openalex.org/W2098023550","https://openalex.org/W2116895571","https://openalex.org/W2123845384","https://openalex.org/W2125804745","https://openalex.org/W2125826054","https://openalex.org/W2126627383","https://openalex.org/W2136145671","https://openalex.org/W2150208009","https://openalex.org/W2165312548","https://openalex.org/W2169048918","https://openalex.org/W2170089054","https://openalex.org/W2914037595","https://openalex.org/W2993383518","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330"],"abstract_inverted_index":{"Metagenomics":[0],"offers":[1],"a":[2,92,127,149],"way":[3],"to":[4,12,57,137],"analyze":[5],"biotopes":[6],"at":[7],"the":[8,33,42,48],"genomic":[9],"level":[10],"and":[11,15,32,83,159],"reach":[13],"functional":[14,36],"taxonomical":[16,34],"conclusions.":[17],"The":[18],"bio-analyzes":[19],"of":[20,50,80,101,130,151],"large":[21,72,81,102],"metagenomic":[22,53,62,73,103,152],"projects":[23],"face":[24],"critical":[25],"limitations:":[26],"complex":[27],"metagenomes":[28],"cannot":[29],"be":[30,135],"assembled":[31],"or":[35,75],"annotations":[37],"are":[38,113,122],"much":[39],"smaller":[40],"than":[41],"real":[43],"biological":[44],"diversity.":[45],"This":[46],"motivated":[47],"development":[49],"de":[51],"novo":[52],"read":[54,131,140],"comparison":[55],"approaches":[56,67],"extract":[58],"information":[59],"contained":[60],"in":[61],"datasets.":[63],"However,":[64],"these":[65],"new":[66],"do":[68],"not":[69],"scale":[70],"up":[71],"projects,":[74],"generate":[76],"an":[77,116],"important":[78],"number":[79],"intermediate":[82],"result":[84],"files.":[85],"We":[86],"introduce":[87],"Commet":[88,147],"(\u201cCOmpare":[89],"Multiple":[90],"METagenomes\u201d),":[91],"method":[93],"that":[94,133],"provides":[95],"similarity":[96],"overview":[97],"between":[98],"all":[99,109,111],"datasets":[100],"projects.":[104],"Directly":[105],"from":[106],"non-assembled":[107],"reads,":[108],"against":[110],"comparisons":[112],"performed":[114],"through":[115],"efficient":[117],"indexing":[118],"strategy.":[119],"Then,":[120],"results":[121],"stored":[123],"as":[124],"bit":[125],"vectors,":[126],"compressed":[128],"representation":[129],"files,":[132],"can":[134],"used":[136],"further":[138],"combine":[139],"subsets":[141],"by":[142,157],"common":[143],"logical":[144],"operations.":[145],"Finally,":[146],"computes":[148],"clusterization":[150],"datasets,":[153],"which":[154],"is":[155],"visualized":[156],"dendrogram":[158],"heatmaps.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":3}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2019-07-30T00:00:00"}
