{"id":"https://openalex.org/W2037560244","doi":"https://doi.org/10.1109/bibm.2013.6732726","title":"Computational synchronization improves the consistency of gene expression patterns over multiple experiments","display_name":"Computational synchronization improves the consistency of gene expression patterns over multiple experiments","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2037560244","doi":"https://doi.org/10.1109/bibm.2013.6732726","mag":"2037560244"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2013.6732726","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732726","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106892283","display_name":"Wei Zhao","orcid":"https://orcid.org/0000-0003-4653-8095"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210167254","display_name":"Singapore-MIT Alliance for Research and Technology","ror":"https://ror.org/05yb3w112","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210167254"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wei Zhao","raw_affiliation_strings":["School of Electrical and Electronic Engineering, Nanyang Technological University","Singapore MIT Alliance for Res. & Technol., Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronic Engineering, Nanyang Technological University","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Singapore MIT Alliance for Res. & Technol., Singapore, Singapore","institution_ids":["https://openalex.org/I4210167254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082613025","display_name":"Justin Dauwels","orcid":"https://orcid.org/0000-0002-4390-1568"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210167254","display_name":"Singapore-MIT Alliance for Research and Technology","ror":"https://ror.org/05yb3w112","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210167254"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Justin Dauwels","raw_affiliation_strings":["School of Electrical and Electronic Engineering, Nanyang Technological University","Singapore MIT Alliance for Res. & Technol., Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronic Engineering, Nanyang Technological University","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Singapore MIT Alliance for Res. & Technol., Singapore, Singapore","institution_ids":["https://openalex.org/I4210167254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049476042","display_name":"Jianshu Cao","orcid":"https://orcid.org/0000-0001-7616-7809"},"institutions":[{"id":"https://openalex.org/I4210167254","display_name":"Singapore-MIT Alliance for Research and Technology","ror":"https://ror.org/05yb3w112","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210167254"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jianshu Cao","raw_affiliation_strings":["Singapore-MIT Alliance for Research and Technology, Singapore","Singapore MIT Alliance for Res. & Technol., Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore-MIT Alliance for Research and Technology, Singapore","institution_ids":["https://openalex.org/I4210167254"]},{"raw_affiliation_string":"Singapore MIT Alliance for Res. & Technol., Singapore, Singapore","institution_ids":["https://openalex.org/I4210167254"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07811402,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"43","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synchronization","display_name":"Synchronization (alternating current)","score":0.6917375326156616},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.6668123602867126},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.628858208656311},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.5765550136566162},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5259671211242676},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5079663395881653},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.49941396713256836},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48929283022880554},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.42181137204170227},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4135414659976959},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38667231798171997},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.355354905128479},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3410072922706604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32599520683288574},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25223368406295776},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19987154006958008}],"concepts":[{"id":"https://openalex.org/C2778562939","wikidata":"https://www.wikidata.org/wiki/Q1298791","display_name":"Synchronization (alternating current)","level":3,"score":0.6917375326156616},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.6668123602867126},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.628858208656311},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5765550136566162},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5259671211242676},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5079663395881653},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.49941396713256836},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48929283022880554},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.42181137204170227},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4135414659976959},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38667231798171997},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.355354905128479},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3410072922706604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32599520683288574},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25223368406295776},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19987154006958008},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2013.6732726","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732726","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2002537912","https://openalex.org/W2020251171","https://openalex.org/W2112047656","https://openalex.org/W2141154417","https://openalex.org/W2145456195","https://openalex.org/W2163443861"],"related_works":["https://openalex.org/W2796636403","https://openalex.org/W2364565895","https://openalex.org/W2015700328","https://openalex.org/W2767847608","https://openalex.org/W2911678823","https://openalex.org/W2152648570","https://openalex.org/W2037892364","https://openalex.org/W2183420549","https://openalex.org/W2081507994","https://openalex.org/W1972696957"],"abstract_inverted_index":{"Gene":[0],"expression":[1,25,63,113,145],"level":[2],"is":[3],"measured":[4],"on":[5,127],"a":[6,136],"population":[7],"of":[8,19,75,107,143],"cells":[9],"in":[10,29,38,67],"the":[11,16,22,30,39,46,53,58,61,68,73,97,141],"microarray":[12,33,70,105,120],"experiments.":[13,83,149],"Due":[14],"to":[15,90,95,139],"inevitable":[17],"decay":[18,74],"cell":[20,54,76,101],"synchrony,":[21,55],"intrinsic":[23,62,112],"gene":[24,144],"patterns":[26,64,114,146],"are":[27,65,115],"blurred":[28,66],"observed":[31,69],"time-series":[32],"data.":[34,71],"Furthermore,":[35],"slight":[36],"differences":[37],"experimental":[40],"condition":[41],"could":[42,134],"be":[43,135],"amplified":[44],"as":[45],"experiments":[47,106],"continue,":[48],"and":[49],"eventually":[50],"considerably":[51],"influence":[52],"which":[56],"dominates":[57],"way":[59],"how":[60,89],"Therefore,":[72],"synchrony":[77,102],"can":[78],"cause":[79],"variability":[80,98],"between":[81,103],"different":[82,104],"In":[84],"this":[85],"paper,":[86],"we":[87],"demonstrate":[88],"utilize":[91],"computational":[92,132],"synchronization":[93,133],"approach":[94,138],"eliminate":[96],"caused":[99],"by":[100],"Plasmodium":[108],"falciparum.":[109],"Specifically,":[110],"The":[111,123],"respectively":[116],"reconstructed":[117],"for":[118],"each":[119],"data":[121,129],"set.":[122],"preliminary":[124],"evaluations":[125],"conducted":[126],"synthetic":[128],"suggest":[130],"that":[131],"useful":[137],"improve":[140],"consistency":[142],"over":[147],"multiple":[148]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
