{"id":"https://openalex.org/W2071890257","doi":"https://doi.org/10.1109/bibm.2013.6732609","title":"Syn-Lethality: An integrative knowledge base of synthetic lethality towards discovery of selective anticancer therapies","display_name":"Syn-Lethality: An integrative knowledge base of synthetic lethality towards discovery of selective anticancer therapies","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2071890257","doi":"https://doi.org/10.1109/bibm.2013.6732609","mag":"2071890257"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2013.6732609","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732609","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044746916","display_name":"Xuejuan Li","orcid":"https://orcid.org/0000-0003-4086-6063"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Xue-juan Li","raw_affiliation_strings":["Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798"],"affiliations":[{"raw_affiliation_string":"Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000508647","display_name":"Shital Kumar Mishra","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Shital K. Mishra","raw_affiliation_strings":["Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798"],"affiliations":[{"raw_affiliation_string":"Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340964","display_name":"Min Wu","orcid":"https://orcid.org/0000-0003-0977-3600"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Min Wu","raw_affiliation_strings":["Institutc for Infocomm Research (I2R), Singapore","Inst. For Infocomm Res., Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Institutc for Infocomm Research (I2R), Singapore","institution_ids":["https://openalex.org/I3005327000"]},{"raw_affiliation_string":"Inst. For Infocomm Res., Singapore, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100403556","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0003-2176-3835"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798"],"affiliations":[{"raw_affiliation_string":"Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014529529","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0001-6774-9786"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798 ; Genome Institute of Singapore (GIS), Biopolis, Singapore 138672"],"affiliations":[{"raw_affiliation_string":"Bioinforrnatics Research Centre (BIRC), Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Bioinformatics Research Centre (BIRC), School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798 ; Genome Institute of Singapore (GIS), Biopolis, Singapore 138672","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044746916"],"corresponding_institution_ids":["https://openalex.org/I172675005"],"apc_list":null,"apc_paid":null,"fwci":0.7311,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.71155379,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synthetic-lethality","display_name":"Synthetic lethality","score":0.9557274580001831},{"id":"https://openalex.org/keywords/lethality","display_name":"Lethality","score":0.7055667638778687},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5939225554466248},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5552720427513123},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5356898307800293},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5151668787002563},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4727360010147095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4291221499443054},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3547971248626709},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2729187309741974},{"id":"https://openalex.org/keywords/dna-repair","display_name":"DNA repair","score":0.12201070785522461}],"concepts":[{"id":"https://openalex.org/C2778502085","wikidata":"https://www.wikidata.org/wiki/Q7662767","display_name":"Synthetic lethality","level":4,"score":0.9557274580001831},{"id":"https://openalex.org/C20379349","wikidata":"https://www.wikidata.org/wiki/Q1720706","display_name":"Lethality","level":2,"score":0.7055667638778687},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5939225554466248},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5552720427513123},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5356898307800293},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5151668787002563},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4727360010147095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4291221499443054},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3547971248626709},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2729187309741974},{"id":"https://openalex.org/C134935766","wikidata":"https://www.wikidata.org/wiki/Q210538","display_name":"DNA repair","level":3,"score":0.12201070785522461}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2013.6732609","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732609","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.75,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1574723537","https://openalex.org/W1677573439","https://openalex.org/W1964661396","https://openalex.org/W2003516452","https://openalex.org/W2009931781","https://openalex.org/W2017289276","https://openalex.org/W2029971236","https://openalex.org/W2061001563","https://openalex.org/W2078444181","https://openalex.org/W2123879591","https://openalex.org/W2124156743","https://openalex.org/W2134580407","https://openalex.org/W2147462655","https://openalex.org/W2160413577","https://openalex.org/W2161793295","https://openalex.org/W2170583315"],"related_works":["https://openalex.org/W2116506288","https://openalex.org/W3093199425","https://openalex.org/W4391952194","https://openalex.org/W1508071893","https://openalex.org/W3097247875","https://openalex.org/W4280520494","https://openalex.org/W2161566038","https://openalex.org/W4400224178","https://openalex.org/W2950148520","https://openalex.org/W2518938096"],"abstract_inverted_index":{"Synthetic":[0],"lethality":[1,168],"(SL)":[2],"is":[3,64,93],"a":[4,17,22,28,33,56,65,109,144,176],"novel":[5,161],"strategy":[6],"for":[7,150],"anticancer":[8,162],"therapies,":[9],"whereby":[10],"mutations":[11],"of":[12,21,90,114,160],"two":[13],"genes":[14,126],"will":[15,25,41,155],"kill":[16,43],"cell":[18],"but":[19],"mutation":[20,30],"single":[23],"gene":[24,106,115],"not.":[26],"Therefore,":[27],"cancer-specific":[29],"combined":[31],"with":[32,112,147],"drug-induced":[34],"mutation,":[35],"if":[36],"they":[37],"have":[38,50,58],"SL":[39,48,73,91,105,125],"interactions,":[40],"selectively":[42],"cancer":[44],"cells.":[45],"While":[46],"numerous":[47],"interactions":[49,74],"been":[51,59],"identified":[52],"in":[53,61],"yeast,":[54],"only":[55],"few":[57],"known":[60],"human.":[62],"There":[63],"pressing":[66],"need":[67],"to":[68,76,95,133],"systematically":[69],"discover":[70],"and":[71,102,118,152],"understand":[72],"specific":[75],"human":[77,96,104,135],"cancer.":[78,97],"In":[79],"this":[80],"paper,":[81],"we":[82],"present":[83],"Syn-Lethality,":[84],"the":[85,158],"first":[86],"integrative":[87,139],"knowledge":[88,140],"base":[89],"that":[92],"dedicated":[94],"It":[98,121],"integrates":[99],"experimentally":[100],"discovered":[101],"verified":[103],"pairs":[107],"into":[108],"network,":[110],"associated":[111],"annotations":[113],"functions,":[116],"pathways":[117],"molecular":[119],"mechanisms.":[120],"also":[122],"includes":[123],"yeast":[124],"from":[127],"high-throughput":[128],"screenings":[129],"which":[130],"are":[131],"mapped":[132],"orthologous":[134],"genes.":[136],"Such":[137],"an":[138],"base,":[141],"organized":[142],"as":[143,175],"relational":[145],"database":[146,171],"user":[148],"interface":[149],"searching":[151],"network":[153],"visualization,":[154],"greatly":[156],"expedite":[157],"discovery":[159],"drug":[163],"targets":[164],"based":[165],"on":[166],"synthetic":[167],"interactions.":[169],"The":[170],"can":[172],"be":[173],"downloaded":[174],"stand-alone":[177],"Java":[178],"application":[179],"from:":[180],"http://www.ntu.edu.sg/home/zhengjie/software/Syn-Lethality/.":[181]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
