{"id":"https://openalex.org/W2059321073","doi":"https://doi.org/10.1109/bibm.2013.6732578","title":"G-Bean: An ontology-graph based web tool for biomedical literature retrieval","display_name":"G-Bean: An ontology-graph based web tool for biomedical literature retrieval","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2059321073","doi":"https://doi.org/10.1109/bibm.2013.6732578","mag":"2059321073"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2013.6732578","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732578","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100320621","display_name":"Yuanyuan Zhang","orcid":"https://orcid.org/0000-0001-6521-6556"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuanyuan Zhang","raw_affiliation_strings":["School of Computing, Clemson University, Clemson, South Carolina, USA","Sch. of Comput., Clemson Univ., Clemson, SC, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Clemson University, Clemson, South Carolina, USA","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"Sch. of Comput., Clemson Univ., Clemson, SC, USA#TAB#","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100342721","display_name":"Liang Dong","orcid":"https://orcid.org/0000-0003-2651-6884"},"institutions":[{"id":"https://openalex.org/I4210103637","display_name":"Barnes & Noble (United States)","ror":"https://ror.org/019w40127","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103637"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Dong","raw_affiliation_strings":["Barnes and Noble, LLC, New York City, New York, USA","Barnes & Noble LLC, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Barnes and Noble, LLC, New York City, New York, USA","institution_ids":["https://openalex.org/I4210103637"]},{"raw_affiliation_string":"Barnes & Noble LLC, New York, NY, USA","institution_ids":["https://openalex.org/I4210103637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100656226","display_name":"Lin Li","orcid":"https://orcid.org/0009-0002-2570-6723"},"institutions":[{"id":"https://openalex.org/I127362389","display_name":"Murray State University","ror":"https://ror.org/01fmwcn13","country_code":"US","type":"education","lineage":["https://openalex.org/I127362389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lin Li","raw_affiliation_strings":["Department of Computer Science and Information Systems, Murray State University, Murray, Kentucky, USA","Department of Computer Science and Information Systems, Murray State University, Murray, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems, Murray State University, Murray, Kentucky, USA","institution_ids":["https://openalex.org/I127362389"]},{"raw_affiliation_string":"Department of Computer Science and Information Systems, Murray State University, Murray, KY, USA","institution_ids":["https://openalex.org/I127362389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047296304","display_name":"Pradip K. Srimani","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pradip K. Srimani","raw_affiliation_strings":["School of Computing, Clemson University, Clemson, South Carolina, USA","Sch. of Comput., Clemson Univ., Clemson, SC, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Clemson University, Clemson, South Carolina, USA","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"Sch. of Comput., Clemson Univ., Clemson, SC, USA#TAB#","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036357902","display_name":"Philip S. Yu","orcid":"https://orcid.org/0000-0002-3491-5968"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip S. Yu","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Chicago, Chicago, Illinois, USA","Department of computer Science, University of Illinois at Chicago, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, Illinois, USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Department of computer Science, University of Illinois at Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100687159","display_name":"James Z. Wang","orcid":"https://orcid.org/0000-0003-4379-4173"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Z. Wang","raw_affiliation_strings":["School of Computing, Clemson University, Clemson, South Carolina, USA","Sch. of Comput., Clemson Univ., Clemson, SC, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Clemson University, Clemson, South Carolina, USA","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"Sch. of Comput., Clemson Univ., Clemson, SC, USA#TAB#","institution_ids":["https://openalex.org/I8078737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.0505,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.8705796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"623","last_page":"623"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8582395315170288},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.8068385124206543},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6061731576919556},{"id":"https://openalex.org/keywords/query-expansion","display_name":"Query expansion","score":0.6002538204193115},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.509311318397522},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.5088982582092285},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.49431777000427246},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47274482250213623},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.45136475563049316},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34849292039871216},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.29843905568122864},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.23953676223754883},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.22113201022148132},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.13807430863380432}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8582395315170288},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.8068385124206543},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6061731576919556},{"id":"https://openalex.org/C99016210","wikidata":"https://www.wikidata.org/wiki/Q5488129","display_name":"Query expansion","level":2,"score":0.6002538204193115},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.509311318397522},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.5088982582092285},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.49431777000427246},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47274482250213623},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.45136475563049316},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34849292039871216},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.29843905568122864},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.23953676223754883},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.22113201022148132},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.13807430863380432},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2013.6732578","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732578","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W73613318","https://openalex.org/W155542634","https://openalex.org/W1555766779","https://openalex.org/W1575084925","https://openalex.org/W1591327551","https://openalex.org/W1593657456","https://openalex.org/W1977343191","https://openalex.org/W1988512338","https://openalex.org/W2031105697","https://openalex.org/W2055518963","https://openalex.org/W2059491546","https://openalex.org/W2060553481","https://openalex.org/W2071664212","https://openalex.org/W2073247784","https://openalex.org/W2081763859","https://openalex.org/W2085449698","https://openalex.org/W2104049510","https://openalex.org/W2105106523","https://openalex.org/W2122402213","https://openalex.org/W2157054705","https://openalex.org/W2163303745","https://openalex.org/W2170344111","https://openalex.org/W2171695133","https://openalex.org/W2270018644","https://openalex.org/W2977393556"],"related_works":["https://openalex.org/W4282568653","https://openalex.org/W2096359267","https://openalex.org/W1521725692","https://openalex.org/W3008917487","https://openalex.org/W2119380317","https://openalex.org/W2901901036","https://openalex.org/W3197639690","https://openalex.org/W2070155952","https://openalex.org/W2082868123","https://openalex.org/W4236234562"],"abstract_inverted_index":{"To":[0],"address":[1,85],"the":[2,32,47,61,70,81,86,89],"need":[3],"for":[4,27],"an":[5,16,39],"efficient":[6],"and":[7,66,104],"effective":[8],"biomedical":[9,24,29],"information":[10,68],"retrieval":[11,62],"system,":[12],"this":[13],"paper":[14],"presents":[15],"ontology-graph":[17,40],"based":[18,23,41,109],"web":[19],"tool,":[20],"G-Bean":[21],"(graph":[22],"search":[25,36,95,102],"engine),":[26],"searching":[28],"documents":[30],"from":[31,69],"MEDLINE":[33],"database.":[34,71],"This":[35,94],"engine":[37,96],"uses":[38],"query":[42,49,52,57],"expansion":[43],"technique":[44],"to":[45,78,84],"expand":[46],"initial":[48],"with":[50],"additional":[51,106],"terms":[53],"and/or":[54],"more":[55,64],"specific":[56],"concepts,":[58],"resulting":[59],"in":[60],"of":[63,88],"accurate":[65],"relevant":[67,107],"A":[72],"multithreading":[73],"parallel":[74],"process":[75],"is":[76],"used":[77],"automatically":[79],"generate":[80],"document":[82],"index":[83],"inefficiency":[87],"PubMed's":[90],"manual":[91],"indexing":[92],"process.":[93],"can":[97],"also":[98],"discover":[99],"user's":[100],"true":[101],"intention":[103],"retrieve":[105],"articles":[108,111],"on":[110],"that":[112],"he/she":[113],"has":[114],"already":[115],"shown":[116],"interest":[117],"in.":[118]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
