{"id":"https://openalex.org/W1998599367","doi":"https://doi.org/10.1109/bibm.2013.6732465","title":"A dividing-and-matching algorithm to detect conserved protein complexes via local network alignment","display_name":"A dividing-and-matching algorithm to detect conserved protein complexes via local network alignment","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W1998599367","doi":"https://doi.org/10.1109/bibm.2013.6732465","mag":"1998599367"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2013.6732465","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732465","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Peng","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","[School of Information Science and Engineering, Central South University, ChangSha, China]"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"[School of Information Science and Engineering, Central South University, ChangSha, China]","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","[School of Information Science and Engineering, Central South University, ChangSha, China]"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"[School of Information Science and Engineering, Central South University, ChangSha, China]","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fangxiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering, Department of Mechanical Engineering University of Saskatchewan, Saskatoon, Canada","[Dept. of Mech. Eng., Univ. of Saskatchewan, Saskatoon, SK, Canada]"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, Department of Mechanical Engineering University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"[Dept. of Mech. Eng., Univ. of Saskatchewan, Saskatoon, SK, Canada]","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053073532"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.1462,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54904001,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"7302","issue":null,"first_page":"78","last_page":"81"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.593274712562561},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5798202753067017},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.5731815099716187},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5549625754356384},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.543673038482666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5302321910858154},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.5144203305244446},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.49543845653533936},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.49536311626434326},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4420424997806549},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.35805970430374146},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34969669580459595},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3337782323360443},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3274305462837219},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32699406147003174},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26915448904037476},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20887699723243713},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19230622053146362},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19114920496940613},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.16726183891296387},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.15825968980789185},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10571750998497009}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.593274712562561},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5798202753067017},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.5731815099716187},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5549625754356384},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.543673038482666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5302321910858154},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5144203305244446},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.49543845653533936},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.49536311626434326},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4420424997806549},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.35805970430374146},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34969669580459595},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3337782323360443},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3274305462837219},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32699406147003174},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26915448904037476},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20887699723243713},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19230622053146362},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19114920496940613},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16726183891296387},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.15825968980789185},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10571750998497009},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2013.6732465","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2013.6732465","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4099999964237213,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1486817521","https://openalex.org/W1518994209","https://openalex.org/W1625061074","https://openalex.org/W1984209790","https://openalex.org/W1986214964","https://openalex.org/W1989206701","https://openalex.org/W2013216457","https://openalex.org/W2024166504","https://openalex.org/W2043795984","https://openalex.org/W2066235893","https://openalex.org/W2099364528","https://openalex.org/W2107067224","https://openalex.org/W2122799790","https://openalex.org/W2124166542","https://openalex.org/W2125179362","https://openalex.org/W2131858043","https://openalex.org/W2132582966","https://openalex.org/W2137648512","https://openalex.org/W2160648174","https://openalex.org/W2165533101","https://openalex.org/W2167869241"],"related_works":["https://openalex.org/W2103737249","https://openalex.org/W2029514038","https://openalex.org/W2051969447","https://openalex.org/W2468116983","https://openalex.org/W2948014085","https://openalex.org/W1974956921","https://openalex.org/W2061567716","https://openalex.org/W2111937814","https://openalex.org/W1864728009","https://openalex.org/W2505756865"],"abstract_inverted_index":{"Local":[0],"network":[1,61,69,82,140],"alignment":[2,141],"is":[3,102],"an":[4],"effective":[5],"way":[6],"to":[7,19,54,78,83,124],"comparatively":[8],"analyze":[9],"a":[10,47,98,106],"pair":[11,107,133],"of":[12,39,67,91,108,118,127,183],"protein-protein":[13],"interaction":[14],"(PPI)":[15],"networks":[16,176],"so":[17],"as":[18],"identify":[20],"the":[21,34,79,89,130,164],"common":[22,85,93],"subnetworks":[23,71,75],"(conserved":[24],"protein":[25,57,132,161,166],"complexes)":[26],"across":[27],"species,":[28],"which":[29],"helps":[30],"us":[31],"better":[32],"understand":[33],"structure,":[35],"function":[36],"and":[37,72,145],"evolution":[38],"biological":[40],"cells.":[41],"In":[42,88],"this":[43],"work,":[44],"we":[45,103],"propose":[46],"new":[48],"dividing-and-matching":[49],"method":[50],"named":[51],"by":[52,171],"DAMAlign":[53,63,96,153,172],"detect":[55],"conserved":[56,165],"complexes":[58,167],"via":[59],"local":[60],"alignment.":[62],"firstly":[64],"partitions":[65],"one":[66,116,126],"PPI":[68,81,175],"into":[70],"then":[73],"these":[74],"are":[76,169,177],"mapped":[77],"other":[80,155],"find":[84],"connected":[86,94],"components.":[87],"course":[90],"finding":[92],"components,":[95],"adopts":[97],"lenient":[99],"criteria":[100],"that":[101,152,168],"locally":[104],"extend":[105],"homologous":[109,131],"proteins":[110],"if":[111],"there":[112],"exists":[113],"at":[114],"least":[115],"path":[117],"length":[119],"not":[120],"larger":[121],"than":[122],"2":[123],"connect":[125],"node":[128],"in":[129,134,158,181],"its":[135],"corresponding":[136],"network.":[137],"We":[138],"implement":[139],"between":[142],"S.":[143],"cerevisiae":[144],"D.":[146],"melanogaster.":[147],"The":[148],"experimental":[149],"results":[150],"show":[151],"outperforms":[154],"existing":[156],"methods":[157],"recovering":[159],"known":[160],"complexes.":[162],"Moreover,":[163],"detected":[170],"from":[173],"different":[174],"also":[178],"functional":[179],"similar":[180],"terms":[182],"their":[184],"GO":[185],"semantic":[186],"similarity.":[187]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}