{"id":"https://openalex.org/W2053086641","doi":"https://doi.org/10.1109/bibm.2012.6392737","title":"The e!DAL JAVA-API: Store, share and cite primary data in life sciences","display_name":"The e!DAL JAVA-API: Store, share and cite primary data in life sciences","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2053086641","doi":"https://doi.org/10.1109/bibm.2012.6392737","mag":"2053086641"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2012.6392737","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392737","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071420924","display_name":"Daniel Arend","orcid":"https://orcid.org/0000-0002-2455-5938"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Daniel Arend","raw_affiliation_strings":["Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround"],"affiliations":[{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091392435","display_name":"Matthias Lange","orcid":"https://orcid.org/0000-0002-4316-078X"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Lange","raw_affiliation_strings":["Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround"],"affiliations":[{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087586426","display_name":"Christian Colmsee","orcid":"https://orcid.org/0000-0003-4387-4923"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Colmsee","raw_affiliation_strings":["Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround"],"affiliations":[{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081849467","display_name":"Steffen Flemming","orcid":null},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen Flemming","raw_affiliation_strings":["Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround"],"affiliations":[{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jinbo Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jinbo Chen","raw_affiliation_strings":["Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround"],"affiliations":[{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058475324","display_name":"Uwe Scholz","orcid":"https://orcid.org/0000-0001-6113-3518"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Uwe Scholz","raw_affiliation_strings":["Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround"],"affiliations":[{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research, Stadt Seeland, Germany","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Cytogenetics and Genome Analysis / Bioinformatics and Information Technology Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Stadt Seeland, OT Gatersleben, Germany, Backround","institution_ids":["https://openalex.org/I315704651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071420924"],"corresponding_institution_ids":["https://openalex.org/I315704651","https://openalex.org/I4210127902"],"apc_list":null,"apc_paid":null,"fwci":2.2164,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.91073874,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"7","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9702000021934509,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9391999840736389,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7605035305023193},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6314895153045654},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5118860006332397},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5010323524475098},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.49083051085472107},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.4719240665435791},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4602917432785034},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44541341066360474},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.44360771775245667},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39758068323135376},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36520639061927795},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13961437344551086}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7605035305023193},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6314895153045654},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5118860006332397},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5010323524475098},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.49083051085472107},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.4719240665435791},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4602917432785034},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44541341066360474},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.44360771775245667},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39758068323135376},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36520639061927795},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13961437344551086},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2012.6392737","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392737","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1484115408","https://openalex.org/W1588488206","https://openalex.org/W1610570299","https://openalex.org/W1654060464","https://openalex.org/W1971242772","https://openalex.org/W1977032720","https://openalex.org/W2022381538","https://openalex.org/W2057414058","https://openalex.org/W2059942711","https://openalex.org/W2061476066","https://openalex.org/W2065412713","https://openalex.org/W2142950958","https://openalex.org/W2156467546","https://openalex.org/W2156892696","https://openalex.org/W2162965868","https://openalex.org/W2399869838","https://openalex.org/W2897535665","https://openalex.org/W6636323515"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W2429057255","https://openalex.org/W2187546663","https://openalex.org/W148745890","https://openalex.org/W4389670110","https://openalex.org/W2611942503","https://openalex.org/W4315621326","https://openalex.org/W2899790217","https://openalex.org/W2598865957","https://openalex.org/W1576092969"],"abstract_inverted_index":{"Background:":[0],"Life":[1],"sciences":[2,212],"are":[3,64,165],"data":[4,29,111,122,137,150,169,171,185,208,219,259,265,274,279],"intensive.":[5],"High":[6],"throughput":[7],"technologies,":[8],"like":[9,158],"\"Next-Generation-Sequencing\",":[10],"\"Phenotyping\"":[11],"and":[12,42,47,76,107,146,167,179,187,195,203,237,278,293],"other":[13],"-omics":[14],"technologies":[15],"produce":[16],"a":[17,34,39,131,148,159,258,289],"huge":[18],"amount":[19],"of":[20,36,56,79],"primary":[21,28,57,110,136,149],"data.":[22],"In":[23],"classic":[24,121],"scientific":[25,62],"publication":[26],"process,":[27],"is":[30,52,82,213,269],"usually":[31],"aggregated":[32],"to":[33,104,120,218,240],"number":[35],"paragraphs":[37],"in":[38,86,94,99,210,250,255],"journal":[40],"article":[41],"proven":[43],"by":[44,118,215],"figures,":[45],"tables":[46],"supplementary":[48],"material.":[49],"So":[50],"it":[51],"that":[53],"the":[54,61,73,87,100,128,294],"value":[55],"data,":[58],"on":[59],"which":[60,113],"conclusions":[63],"based":[65],"on,":[66],"do":[67],"not":[68],"get":[69],"proper":[70],"attention.":[71],"But,":[72],"responsible":[74],"use":[75,249],"efficient":[77,271],"availability":[78],"digital":[80],"resources":[81],"an":[83,155,247,270],"important":[84],"factor":[85],"nowadays":[88],"\"e-science\"":[89],"age.":[90],"The":[91,190,282],"increased":[92],"attention":[93],"public":[95],"as":[96,98],"well":[97],"research":[101,201],"community":[102],"leads":[103],"novel":[105,225],"strategies":[106],"concepts":[108],"for":[109,135,141,174,261,273],"citation,":[112],"must":[114],"be":[115,297],"substantively,":[116],"underpinned":[117],"enhancements":[119],"management":[123,220,236,280],"systems.":[124,189,221,281],"Results:":[125],"We":[126],"present":[127],"JAVA-based":[129],"e.!DAL-API,":[130],"comprehensive":[132],"storage":[133,151,243],"backend":[134],"management.":[138],"It":[139,245],"stands":[140],"(electronical":[142],"Data":[143],"Archive":[144],"Library)":[145],"implement":[147],"infrastructure,":[152],"but":[153],"with":[154,228],"intuitive":[156],"usability":[157],"classical":[160],"file":[161,232],"system.":[162,244],"Main":[163],"features":[164,229],"version":[166,238],"meta":[168],"management,":[170],"citations,":[172],"support":[173],"information":[175,188,276],"retrieval,":[176],"persistent":[177],"identifiers":[178],"its":[180],"easy":[181],"integration":[182],"into":[183],"existing":[184],"frontends":[186],"API":[191],"has":[192],"been":[193],"designed":[194],"tested":[196],"using":[197],"experiences":[198],"from":[199,231],"several":[200],"projects":[202],"literature":[204],"studies.":[205],"Conclusions:":[206],"Primary":[207],"preservation":[209],"life":[211],"accompanied":[214],"enhanced":[216],"requirements":[217,227],"e.!DAL":[222,268],"combines":[223],"this":[224],"arising":[226],"known":[230],"systems,":[233],"databases,":[234],"content":[235],"control":[239],"one":[241],"homogeneous":[242],"supports":[246],"embedded":[248],"stand-alone":[251],"JAVA":[252,283],"software":[253],"or":[254],"server":[256],"mode":[257],"repositories":[260],"collaborative,":[262],"remote":[263],"accessible":[264],"services.":[266],"Thus,":[267],"complement":[272],"frontends,":[275],"systems":[277],"libraries,":[284],"Maven":[285],"artifacts,":[286],"sample":[287],"code,":[288],"show":[290],"case":[291],"demo,":[292],"API-documentation":[295],"can":[296],"downloaded":[298],"from:":[299],"http://projects.ipk-gatersleben.de/eDAL-Project.":[300]},"counts_by_year":[{"year":2014,"cited_by_count":3}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
