{"id":"https://openalex.org/W2153946893","doi":"https://doi.org/10.1109/bibm.2012.6392735","title":"Personalized semantic assistance for the curation of biochemical literature","display_name":"Personalized semantic assistance for the curation of biochemical literature","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2153946893","doi":"https://doi.org/10.1109/bibm.2012.6392735","mag":"2153946893"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2012.6392735","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392735","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084899629","display_name":"Fedor Bakalov","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Fedor Bakalov","raw_affiliation_strings":["Institute for Computer Science, Friedrich Schiller University of Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Friedrich Schiller University of Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014324079","display_name":"Marie\u2010Jean Meurs","orcid":"https://orcid.org/0000-0001-8196-2153"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Marie-Jean Meurs","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024963110","display_name":"Birgitta K\u00f6nig\u2010Ries","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Birgitta Konig-Ries","raw_affiliation_strings":["Institute for Computer Science, Friedrich Schiller University of Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Friedrich Schiller University of Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002362689","display_name":"Bahar Sateli","orcid":null},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]},{"id":"https://openalex.org/I4210148195","display_name":"Concordia University","ror":"https://ror.org/04dwckp88","country_code":"US","type":"education","lineage":["https://openalex.org/I4210148195"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Bahar Sateli","raw_affiliation_strings":["Concordia University, Montreal, QC, CA"],"affiliations":[{"raw_affiliation_string":"Concordia University, Montreal, QC, CA","institution_ids":["https://openalex.org/I60158472","https://openalex.org/I4210148195"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004152813","display_name":"Ren\u00e9 Witte","orcid":"https://orcid.org/0000-0002-4833-075X"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]},{"id":"https://openalex.org/I4210148195","display_name":"Concordia University","ror":"https://ror.org/04dwckp88","country_code":"US","type":"education","lineage":["https://openalex.org/I4210148195"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Rene Witte","raw_affiliation_strings":["Concordia University, Montreal, QC, CA"],"affiliations":[{"raw_affiliation_string":"Concordia University, Montreal, QC, CA","institution_ids":["https://openalex.org/I60158472","https://openalex.org/I4210148195"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109069843","display_name":"Greg Butler","orcid":null},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]},{"id":"https://openalex.org/I4210148195","display_name":"Concordia University","ror":"https://ror.org/04dwckp88","country_code":"US","type":"education","lineage":["https://openalex.org/I4210148195"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Greg Butler","raw_affiliation_strings":["Concordia University, Montreal, QC, CA"],"affiliations":[{"raw_affiliation_string":"Concordia University, Montreal, QC, CA","institution_ids":["https://openalex.org/I60158472","https://openalex.org/I4210148195"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060119095","display_name":"Adrian Tsang","orcid":"https://orcid.org/0000-0002-5892-4797"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Adrian Tsang","raw_affiliation_strings":["Centre for Structural and Functional Genomics, Department of Biology, Concordia University, Montreal, QUE, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Department of Biology, Concordia University, Montreal, QUE, Canada","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5084899629"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11812703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6279","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/haystack","display_name":"Haystack","score":0.9578600525856018},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.760789692401886},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6314029693603516},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5763847827911377},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5670747756958008},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.560308575630188},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5319246053695679},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.525175929069519},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48281463980674744}],"concepts":[{"id":"https://openalex.org/C13424479","wikidata":"https://www.wikidata.org/wiki/Q5687237","display_name":"Haystack","level":2,"score":0.9578600525856018},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.760789692401886},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6314029693603516},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5763847827911377},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5670747756958008},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.560308575630188},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5319246053695679},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.525175929069519},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48281463980674744},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2012.6392735","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392735","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W153269288","https://openalex.org/W1540506897","https://openalex.org/W1573447676","https://openalex.org/W1590585844","https://openalex.org/W1646048262","https://openalex.org/W1987522618","https://openalex.org/W2053673723","https://openalex.org/W2091940856","https://openalex.org/W2094726706","https://openalex.org/W2096525273","https://openalex.org/W2114049512","https://openalex.org/W2114453188","https://openalex.org/W2132784310","https://openalex.org/W2144684733","https://openalex.org/W2145383760","https://openalex.org/W2163040665","https://openalex.org/W2164337735","https://openalex.org/W4250297812","https://openalex.org/W4285719527","https://openalex.org/W6606239694"],"related_works":["https://openalex.org/W4253878822","https://openalex.org/W1965563707","https://openalex.org/W4210692028","https://openalex.org/W1736550718","https://openalex.org/W2808729870","https://openalex.org/W2479343091","https://openalex.org/W2278064783","https://openalex.org/W3174858427","https://openalex.org/W1972480475","https://openalex.org/W4253922839"],"abstract_inverted_index":{"The":[0],"number":[1],"of":[2,18,30,43,74,78,88,100],"scientific":[3],"publications":[4,44,79],"available":[5],"in":[6,38,52,63],"multiple":[7,82],"repositories":[8],"is":[9,17,45],"huge":[10],"and":[11,24,65,84,103],"rapidly":[12],"growing.":[13],"Accessing":[14],"this":[15],"information":[16],"critical":[19],"importance":[20],"to":[21,76,95],"conducting":[22],"research":[23,36],"designing":[25],"experiments.":[26],"However,":[27],"retrieving":[28],"data":[29],"particular":[31],"interest":[32],"for":[33,49],"a":[34,40,50,53,57,72,97],"specific":[35],"field":[37],"such":[39],"large":[41],"volume":[42],"often":[46],"like":[47],"looking":[48],"needle":[51],"haystack.":[54],"We":[55],"present":[56],"web":[58],"platform":[59,70],"that":[60],"supports":[61,85],"researchers":[62],"navigating":[64],"curating":[66],"biochemical":[67],"literature.":[68],"Our":[69],"provides":[71],"single-point":[73],"access":[75],"abstracts":[77],"harvested":[80],"from":[81],"databases":[83],"further":[86],"analysis":[87,106],"these":[89],"abstracts.":[90],"It":[91],"also":[92],"allows":[93],"users":[94],"obtain":[96],"personalized":[98],"view":[99],"the":[101],"literature":[102],"its":[104],"semantic":[105],"results.":[107]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
