{"id":"https://openalex.org/W2056789116","doi":"https://doi.org/10.1109/bibm.2012.6392726","title":"Not AU protein complexes exhibit dense structures in S. cerevisiae PPI network","display_name":"Not AU protein complexes exhibit dense structures in S. cerevisiae PPI network","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2056789116","doi":"https://doi.org/10.1109/bibm.2012.6392726","mag":"2056789116"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2012.6392726","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392726","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100748642","display_name":"Bolin Chen","orcid":"https://orcid.org/0000-0001-5507-2288"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Bolin Chen","raw_affiliation_strings":["Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","Division of Biomedicai Engineering, University of Saskatchewan, Saskatoon, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedicai Engineering, University of Saskatchewan, Saskatoon, Canada#TAB#","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103240063","display_name":"Jinhong Shi","orcid":"https://orcid.org/0000-0001-6118-2248"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jinhong Shi","raw_affiliation_strings":["Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","Division of Biomedicai Engineering, University of Saskatchewan, Saskatoon, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedicai Engineering, University of Saskatchewan, Saskatoon, Canada#TAB#","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering, Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, Canada","Division of Biomedicai Engineering, Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedicai Engineering, Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I32625721"],"apc_list":null,"apc_paid":null,"fwci":0.1324,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.51827509,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9757000207901001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5166035890579224},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.35678189992904663},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.34008464217185974},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3395005762577057},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32295894622802734},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3220102787017822},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27244099974632263},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25894588232040405}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5166035890579224},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.35678189992904663},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.34008464217185974},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3395005762577057},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32295894622802734},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3220102787017822},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27244099974632263},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25894588232040405}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2012.6392726","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392726","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1635771532","https://openalex.org/W1996697843","https://openalex.org/W2026353653","https://openalex.org/W2084619201","https://openalex.org/W2107067224","https://openalex.org/W2121564430","https://openalex.org/W2126153754","https://openalex.org/W2130687290","https://openalex.org/W2136850043","https://openalex.org/W2138003801","https://openalex.org/W2144114537","https://openalex.org/W2148043260","https://openalex.org/W2152495216","https://openalex.org/W2169905457","https://openalex.org/W6636576792","https://openalex.org/W6657002031"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"Various":[0],"algorithms":[1],"have":[2,70,76],"been":[3],"proposed":[4],"to":[5,69,93],"identify":[6,94],"protein":[7,17,31,53,78,86,95],"complexes":[8,18,32,54,96],"from":[9],"PPI":[10,41,98],"networks,":[11],"based":[12],"on":[13,81],"the":[14,48,60,64,106,119],"assumption":[15],"that":[16,28],"are":[19,55,101],"densely":[20],"connected":[21,58],"subgraphs.":[22],"In":[23],"this":[24],"study,":[25],"we":[26,88,113],"conclude":[27],"most":[29],"known":[30,85],"do":[33],"not":[34,56],"exhibit":[35],"dense":[36],"structures":[37,46],"in":[38,47,97,103],"S.":[39],"cerevisiae":[40],"network,":[42],"but":[43],"maintain":[44],"starlike":[45,82],"network.":[49,65],"Moreover,":[50],"vertices":[51,67],"of":[52,63,84,105],"sparsely":[57],"with":[59,118],"rest":[61],"components":[62],"Many":[66],"tend":[68],"more":[71],"outgoing":[72],"interactions":[73],"than":[74],"they":[75],"within":[77],"complexes.":[79],"Based":[80],"properties":[83],"complexes,":[87],"propose":[89],"a":[90],"random-star":[91],"algorithm":[92],"networks.":[99],"Predictions":[100],"evaluated":[102],"terms":[104],"average":[107,120],"f-score.":[108],"After":[109],"excluding":[110],"similar":[111],"clusters,":[112],"finally":[114],"obtained":[115],"744":[116],"predictions":[117],"f-score":[121],"at":[122],"0.51.":[123]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
