{"id":"https://openalex.org/W2047658710","doi":"https://doi.org/10.1109/bibm.2012.6392624","title":"ENISI Visual, an agent-based simulator for modeling gut immunity","display_name":"ENISI Visual, an agent-based simulator for modeling gut immunity","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2047658710","doi":"https://doi.org/10.1109/bibm.2012.6392624","mag":"2047658710"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2012.6392624","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392624","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110078877","display_name":"Yongguo Mei","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongguo Mei","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087379114","display_name":"Raquel Hontecillas","orcid":"https://orcid.org/0000-0003-2942-6294"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raquel Hontecillas","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100449431","display_name":"Xiaoying Zhang","orcid":"https://orcid.org/0000-0002-0055-7322"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoying Zhang","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059350239","display_name":"Keith Bisset","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith Bisset","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Network Dynamics and Simulation Science Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Network Dynamics and Simulation Science Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030954130","display_name":"Stephen Eubank","orcid":"https://orcid.org/0000-0002-7177-309X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Eubank","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Network Dynamics and Simulation Science Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Network Dynamics and Simulation Science Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108092912","display_name":"Stefan Hoops","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Hoops","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020293284","display_name":"Madhav Marathe","orcid":"https://orcid.org/0000-0003-1653-0658"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhav Marathe","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Network Dynamics and Simulation Science Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Network Dynamics and Simulation Science Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101801205","display_name":"Josep Bassaganya\u2010Riera","orcid":"https://orcid.org/0000-0003-2053-650X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josep Bassaganya-Riera","raw_affiliation_strings":["The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Nutritional Immunology and Molecular Nutrition Laboratory, Virginia Tech, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":1.881,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.85206447,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.7838000059127808,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.7838000059127808,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6966999769210815,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7334840893745422},{"id":"https://openalex.org/keywords/immunity","display_name":"Immunity","score":0.45811763405799866},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.3855380117893219},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.36400890350341797},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.34481263160705566},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.17565956711769104},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1380404829978943}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7334840893745422},{"id":"https://openalex.org/C2779341262","wikidata":"https://www.wikidata.org/wiki/Q182581","display_name":"Immunity","level":3,"score":0.45811763405799866},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.3855380117893219},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.36400890350341797},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.34481263160705566},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.17565956711769104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1380404829978943}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2012.6392624","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2012.6392624","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1968782720","https://openalex.org/W2019475109","https://openalex.org/W2076573105","https://openalex.org/W2082206279","https://openalex.org/W2102653059","https://openalex.org/W2116548783","https://openalex.org/W2144014493","https://openalex.org/W2150908245","https://openalex.org/W2156270569","https://openalex.org/W3011439212"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"ENISI":[3,36,106],"Visual,":[4],"an":[5,29],"agent-based":[6],"simulator":[7],"for":[8,19],"modeling":[9],"gut":[10,26],"immunity":[11,27],"to":[12,108],"enteric":[13],"pathogens.":[14],"Gastrointestinal":[15],"systems":[16],"are":[17,59],"important":[18,30],"in-taking":[20],"food":[21],"and":[22,25,41,48,54,64,83,86,94,111,114],"other":[23],"nutritions":[24],"is":[28],"part":[31],"of":[32],"human":[33],"immune":[34,77],"system.":[35],"Visual":[37,107],"provides":[38],"quality":[39],"visualizations":[40],"users":[42,103],"can":[43,74,104],"control":[44],"initial":[45],"cell":[46,80],"concentrations":[47],"the":[49,65],"simulation":[50],"speed,":[51],"take":[52],"snapshots,":[53],"record":[55],"videos.":[56],"The":[57,97],"cells":[58],"represented":[60],"with":[61],"different":[62],"icons":[63,66],"change":[67],"colors":[68],"as":[69],"their":[70],"states":[71],"change.":[72],"Users":[73],"observe":[75],"real-time":[76],"responses,":[78],"including":[79],"recruitment,":[81],"cytokine":[82],"chemokine":[84],"secretion":[85],"dissipation,":[87],"random":[88],"or":[89],"chemotactic":[90],"movement,":[91],"cell-cell":[92],"interactions,":[93],"state":[95],"changes.":[96],"case":[98],"study":[99],"clearly":[100],"shows":[101],"that":[102],"use":[105],"develop":[109],"models":[110],"run":[112],"novel":[113],"insightful":[115],"in":[116],"silico":[117],"experiments.":[118]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
