{"id":"https://openalex.org/W2168687815","doi":"https://doi.org/10.1109/bibm.2011.90","title":"Mining Gene-centric Relationships from Literature to Support Drug Discovery","display_name":"Mining Gene-centric Relationships from Literature to Support Drug Discovery","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2168687815","doi":"https://doi.org/10.1109/bibm.2011.90","mag":"2168687815"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2011.90","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2011.90","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033513993","display_name":"Luis Tari","orcid":null},"institutions":[{"id":"https://openalex.org/I55921689","display_name":"La Roche College","ror":"https://ror.org/04bthcb08","country_code":"US","type":"education","lineage":["https://openalex.org/I55921689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Luis Tari","raw_affiliation_strings":["DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA"],"affiliations":[{"raw_affiliation_string":"DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA","institution_ids":["https://openalex.org/I55921689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078561274","display_name":"Jan K\u00fcntzer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210094361","display_name":"Roche Pharma AG (Germany)","ror":"https://ror.org/00sh68184","country_code":"DE","type":"company","lineage":["https://openalex.org/I118019719","https://openalex.org/I4210094361"]},{"id":"https://openalex.org/I4210149021","display_name":"CS Diagnostics","ror":"https://ror.org/04dqgsa85","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210149021"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Kuntzer","raw_affiliation_strings":["DTI, pRED Informatics, Roche Diagnostics GmbH, Penzberg, Bavaria, Germany"],"affiliations":[{"raw_affiliation_string":"DTI, pRED Informatics, Roche Diagnostics GmbH, Penzberg, Bavaria, Germany","institution_ids":["https://openalex.org/I4210149021","https://openalex.org/I4210094361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062725922","display_name":"Jagruti Patel","orcid":"https://orcid.org/0009-0005-3249-7626"},"institutions":[{"id":"https://openalex.org/I55921689","display_name":"La Roche College","ror":"https://ror.org/04bthcb08","country_code":"US","type":"education","lineage":["https://openalex.org/I55921689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jagruti Patel","raw_affiliation_strings":["SIM, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA"],"affiliations":[{"raw_affiliation_string":"SIM, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA","institution_ids":["https://openalex.org/I55921689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100414208","display_name":"Ying Li","orcid":"https://orcid.org/0000-0002-3506-1255"},"institutions":[{"id":"https://openalex.org/I55921689","display_name":"La Roche College","ror":"https://ror.org/04bthcb08","country_code":"US","type":"education","lineage":["https://openalex.org/I55921689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Li","raw_affiliation_strings":["DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA"],"affiliations":[{"raw_affiliation_string":"DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA","institution_ids":["https://openalex.org/I55921689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110874804","display_name":"Zhengwei Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I55921689","display_name":"La Roche College","ror":"https://ror.org/04bthcb08","country_code":"US","type":"education","lineage":["https://openalex.org/I55921689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhengwei Peng","raw_affiliation_strings":["TMI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA"],"affiliations":[{"raw_affiliation_string":"TMI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA","institution_ids":["https://openalex.org/I55921689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344815","display_name":"Yuan Wang","orcid":"https://orcid.org/0000-0001-7750-3587"},"institutions":[{"id":"https://openalex.org/I118019719","display_name":"Roche (Switzerland)","ror":"https://ror.org/00by1q217","country_code":"CH","type":"company","lineage":["https://openalex.org/I118019719"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Yuan Wang","raw_affiliation_strings":["DTI, pRED Informatics, F. Hoffmann-La Roche AG, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"DTI, pRED Informatics, F. Hoffmann-La Roche AG, Basel, Switzerland","institution_ids":["https://openalex.org/I118019719"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103109865","display_name":"Laura Aguiar","orcid":"https://orcid.org/0000-0003-3093-4667"},"institutions":[{"id":"https://openalex.org/I55921689","display_name":"La Roche College","ror":"https://ror.org/04bthcb08","country_code":"US","type":"education","lineage":["https://openalex.org/I55921689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Aguiar","raw_affiliation_strings":["DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA"],"affiliations":[{"raw_affiliation_string":"DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA","institution_ids":["https://openalex.org/I55921689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059360459","display_name":"James J. Cai","orcid":"https://orcid.org/0000-0002-8081-6725"},"institutions":[{"id":"https://openalex.org/I55921689","display_name":"La Roche College","ror":"https://ror.org/04bthcb08","country_code":"US","type":"education","lineage":["https://openalex.org/I55921689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Cai","raw_affiliation_strings":["DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA"],"affiliations":[{"raw_affiliation_string":"DTI, pRED Informatics, Hoffmann-La Roche Inc., Nutley, NJ, USA","institution_ids":["https://openalex.org/I55921689"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5033513993"],"corresponding_institution_ids":["https://openalex.org/I55921689"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.13233835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2","issue":null,"first_page":"639","last_page":"644"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7496689558029175},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6659570932388306},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.6459493637084961},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5846862196922302},{"id":"https://openalex.org/keywords/business-process-discovery","display_name":"Business process discovery","score":0.5634157061576843},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5463299751281738},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4846285283565521},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4610300660133362},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4379960298538208},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.41773509979248047},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.4169948697090149},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3585493564605713},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30946195125579834},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2773993909358978},{"id":"https://openalex.org/keywords/work-in-process","display_name":"Work in process","score":0.14990493655204773},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14328798651695251},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13086387515068054},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1271439492702484},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.07963508367538452}],"concepts":[{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7496689558029175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6659570932388306},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.6459493637084961},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5846862196922302},{"id":"https://openalex.org/C93453677","wikidata":"https://www.wikidata.org/wiki/Q1017580","display_name":"Business process discovery","level":5,"score":0.5634157061576843},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5463299751281738},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4846285283565521},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4610300660133362},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4379960298538208},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.41773509979248047},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.4169948697090149},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3585493564605713},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30946195125579834},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2773993909358978},{"id":"https://openalex.org/C174998907","wikidata":"https://www.wikidata.org/wiki/Q357662","display_name":"Work in process","level":2,"score":0.14990493655204773},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14328798651695251},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13086387515068054},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1271439492702484},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.07963508367538452},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C85345410","wikidata":"https://www.wikidata.org/wiki/Q851587","display_name":"Business process","level":3,"score":0.0},{"id":"https://openalex.org/C207505557","wikidata":"https://www.wikidata.org/wiki/Q4374012","display_name":"Business process modeling","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2011.90","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2011.90","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1524134026","https://openalex.org/W1966492906","https://openalex.org/W2084715903","https://openalex.org/W2093931624","https://openalex.org/W2107005506","https://openalex.org/W2122732537","https://openalex.org/W2143969914"],"related_works":["https://openalex.org/W372138008","https://openalex.org/W1989373239","https://openalex.org/W57948323","https://openalex.org/W2134290612","https://openalex.org/W2143920642","https://openalex.org/W2496603770","https://openalex.org/W2060045119","https://openalex.org/W4237581822","https://openalex.org/W118909908","https://openalex.org/W2103281268"],"abstract_inverted_index":{"Identifying":[0],"drug":[1,13,59],"target":[2,94],"candidates":[3],"is":[4,18],"an":[5,111],"important":[6],"task":[7],"for":[8,37,89,93,114],"early":[9],"development":[10,22],"throughout":[11],"the":[12,21,35,48,69,99,106,115],"discovery":[14,97],"process.":[15],"This":[16],"process":[17],"supported":[19],"by":[20],"of":[23,31,68,72,117],"new":[24],"high-throughput":[25],"technologies":[26],"that":[27],"enable":[28],"better":[29],"understanding":[30],"disease":[32,56],"mechanism.":[33],"With":[34],"push":[36],"personalized":[38],"medicine,":[39],"more":[40],"experimental":[41],"data":[42,119],"are":[43],"produced":[44],"to":[45,55,64],"identify":[46],"how":[47,105],"genetics":[49],"differ":[50],"among":[51],"individuals":[52],"with":[53],"respect":[54],"mechanism":[57],"and":[58,95],"response.":[60],"It":[61],"becomes":[62],"critical":[63],"facilitate":[65],"effective":[66,112],"analysis":[67,116],"large":[70],"amount":[71],"biological":[73,118],"data.":[74,124],"In":[75],"this":[76],"paper,":[77],"we":[78,103],"describe":[79],"our":[80],"solution":[81],"in":[82],"employing":[83],"text":[84],"mining":[85],"as":[86,121],"a":[87],"technique":[88],"finding":[90],"scientific":[91],"information":[92],"biomarker":[96],"from":[98],"biomedical":[100],"literature.":[101],"Additionally,":[102],"discuss":[104],"extracted":[107],"knowledge":[108],"can":[109],"be":[110],"resource":[113],"such":[120],"next-generation":[122],"sequencing":[123]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
