{"id":"https://openalex.org/W2142857297","doi":"https://doi.org/10.1109/bibm.2010.5706652","title":"Scalable, updatable predictive models for sequence data","display_name":"Scalable, updatable predictive models for sequence data","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2142857297","doi":"https://doi.org/10.1109/bibm.2010.5706652","mag":"2142857297"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2010.5706652","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109118762","display_name":"Neeraj Koul","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Neeraj Koul","raw_affiliation_strings":["Artificial Intelligence Research Laboratory, Department of Computer Science, Iowa State University, Ames, IA, USA","Artificial Intelligence Research Laboratory, Dept. of Computer Science, Iowa State University, Ames, IA - 50014, USA"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Department of Computer Science, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Dept. of Computer Science, Iowa State University, Ames, IA - 50014, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004306097","display_name":"Ngot Bui","orcid":"https://orcid.org/0000-0003-4566-4890"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ngot Bui","raw_affiliation_strings":["Artificial Intelligence Research Laboratory, Department of Computer Science, Iowa State University, Ames, IA, USA","Artificial Intelligence Research Laboratory, Dept. of Computer Science, Iowa State University, Ames, IA - 50014, USA"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Department of Computer Science, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Dept. of Computer Science, Iowa State University, Ames, IA - 50014, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004737962","display_name":"Vasant Honavar","orcid":"https://orcid.org/0000-0001-5399-3489"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vasant Honavar","raw_affiliation_strings":["Artificial Intelligence Research Laboratory, Department of Computer Science, Iowa State University, Ames, IA, USA","Artificial Intelligence Research Laboratory, Dept. of Computer Science, Iowa State University, Ames, IA - 50014, USA"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Department of Computer Science, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Dept. of Computer Science, Iowa State University, Ames, IA - 50014, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5109118762"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":1.3965,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.85658514,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":null,"first_page":"681","last_page":"685"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12072","display_name":"Machine Learning and Algorithms","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8410608768463135},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6817000508308411},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.562255859375},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5291286706924438},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5055079460144043},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.41298648715019226},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.41211721301078796},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4005911350250244},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3514101803302765},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.321228951215744},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.25208815932273865},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.19728311896324158}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8410608768463135},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6817000508308411},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.562255859375},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5291286706924438},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5055079460144043},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.41298648715019226},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.41211721301078796},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4005911350250244},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3514101803302765},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.321228951215744},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.25208815932273865},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.19728311896324158},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2010.5706652","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.189.5043","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.189.5043","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.iastate.edu/%7Ehonavar/Papers/KoulBIBM2010.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1542167717","https://openalex.org/W1589195347","https://openalex.org/W1602398967","https://openalex.org/W1934019294","https://openalex.org/W2022169621","https://openalex.org/W2032870665","https://openalex.org/W2039680623","https://openalex.org/W2100851422","https://openalex.org/W2103960658","https://openalex.org/W2127941101","https://openalex.org/W2129995544","https://openalex.org/W2134283755","https://openalex.org/W2157140289","https://openalex.org/W2166187656","https://openalex.org/W3104314953","https://openalex.org/W6636009177","https://openalex.org/W6640267182","https://openalex.org/W6683281346"],"related_works":["https://openalex.org/W2389214306","https://openalex.org/W2070858352","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W1838576100","https://openalex.org/W2757182831","https://openalex.org/W1497573972","https://openalex.org/W2071659383","https://openalex.org/W1846253165","https://openalex.org/W2124122503"],"abstract_inverted_index":{"The":[0],"emergence":[1],"of":[2,17,60,63,133,143,146,169,181,183],"data":[3,18,27,35,68],"rich":[4],"domains":[5],"has":[6],"led":[7],"to":[8,23,55,95,102,159,177],"an":[9,100],"exponential":[10],"growth":[11],"in":[12,152,175],"the":[13,26,47,56,96,138,144,161,170,186],"size":[14,69],"and":[15,117,155],"number":[16,145],"repositories,":[19],"offering":[20],"exciting":[21],"opportunities":[22],"learn":[24,84,103],"from":[25,89,104,125,185],"using":[28,108],"machine":[29],"learning":[30,48],"algorithms.":[31],"In":[32,44,73],"particular,":[33],"sequence":[34,106,126,188],"is":[36,77],"being":[37],"made":[38],"available":[39],"at":[40],"a":[41,61,78,131],"rapid":[42],"rate.":[43],"many":[45],"applications,":[46],"algorithm":[49],"may":[50],"not":[51],"have":[52],"direct":[53,93],"access":[54,94],"entire":[57],"dataset":[58],"because":[59],"variety":[62],"reasons":[64],"such":[65,74,153],"as":[66],"massive":[67,105],"or":[70,179],"bandwidth":[71],"limitation.":[72],"settings,":[75],"there":[76],"need":[79],"for":[80,149],"techniques":[81,158],"that":[82,128],"can":[83,122,172],"predictive":[85],"models":[86,171],"(e.g.,":[87],"classifiers)":[88],"large":[90],"datasets":[91,107],"without":[92],"data.":[97],"We":[98,136,164],"describe":[99],"approach":[101],"statistical":[109],"queries.":[110,135],"Specifically":[111],"we":[112],"show":[113,166],"how":[114,167],"Markov":[115],"Models":[116],"Probabilistic":[118],"Suffix":[119],"Trees":[120],"(PSTs)":[121],"be":[123,173],"constructed":[124],"databases":[127],"answer":[129],"only":[130],"class":[132],"count":[134],"analyze":[137],"query":[139,162],"complexity":[140],"(a":[141],"measure":[142],"queries":[147],"needed)":[148],"constructing":[150],"classifiers":[151],"settings":[154],"outline":[156],"some":[157,168],"minimize":[160],"complexity.":[163],"also":[165],"updated":[174],"response":[176],"addition":[178],"deletion":[180],"subsets":[182],"sequences":[184],"underlying":[187],"database.":[189]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
