{"id":"https://openalex.org/W2103406616","doi":"https://doi.org/10.1109/bibm.2010.5706590","title":"Module-based biomarker discovery in breast cancer","display_name":"Module-based biomarker discovery in breast cancer","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2103406616","doi":"https://doi.org/10.1109/bibm.2010.5706590","mag":"2103406616"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2010.5706590","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000223629","display_name":"Yuji Zhang","orcid":"https://orcid.org/0000-0002-5429-6762"},"institutions":[{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuji Zhang","raw_affiliation_strings":["Dept. of Electrical & Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, VA, USA","Lombardi Comprehensive Cancer Center, Georgetown University medical Center, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Electrical & Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, VA, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University medical Center, Washington, DC, USA","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077237795","display_name":"J. Xuan Jason","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Xuan Jason","raw_affiliation_strings":["Dept. of Electrical & Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, VA"],"affiliations":[{"raw_affiliation_string":"Dept. of Electrical & Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, VA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011322600","display_name":"Robert Clarke","orcid":"https://orcid.org/0000-0002-9278-0854"},"institutions":[{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Clarke","raw_affiliation_strings":["Lombardi Comprehensive Cancer Center, Georgetown University medical Center, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University medical Center, Washington, DC, USA","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062547493","display_name":"W. Ressom Habtom","orcid":null},"institutions":[{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Ressom Habtom","raw_affiliation_strings":["Lombardi Comprehensive Cancer Center, Georgetown University medical Center, Washington, DC"],"affiliations":[{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University medical Center, Washington, DC","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000223629"],"corresponding_institution_ids":["https://openalex.org/I184565670","https://openalex.org/I2799903593","https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":0.2643,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.58856564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"352","last_page":"356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.693583607673645},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.6493560671806335},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5316375494003296},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5231134295463562},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.44709014892578125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3461708426475525},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2727314233779907},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.18487238883972168},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17087289690971375},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.10983529686927795},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06373745203018188},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05974465608596802}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.693583607673645},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.6493560671806335},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5316375494003296},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5231134295463562},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.44709014892578125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3461708426475525},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2727314233779907},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.18487238883972168},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17087289690971375},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.10983529686927795},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06373745203018188},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05974465608596802}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2010.5706590","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5899999737739563}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1599207601","https://openalex.org/W1977868384","https://openalex.org/W1992045522","https://openalex.org/W1998831452","https://openalex.org/W2002844845","https://openalex.org/W2007951468","https://openalex.org/W2046747076","https://openalex.org/W2098045561","https://openalex.org/W2112262143","https://openalex.org/W2121158863","https://openalex.org/W2127053639","https://openalex.org/W2129321896","https://openalex.org/W2139522545","https://openalex.org/W2142125950","https://openalex.org/W2153624566","https://openalex.org/W2154947819","https://openalex.org/W2157132621","https://openalex.org/W2157195033","https://openalex.org/W2160450758","https://openalex.org/W2163563958","https://openalex.org/W2167119716"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W2792951836","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977","https://openalex.org/W2326771431"],"abstract_inverted_index":{"The":[0,65,92],"availability":[1],"of":[2,58,85,89],"genome-wide":[3],"biological":[4,36,123],"network":[5,21,37],"data":[6,42,76],"opens":[7],"up":[8],"new":[9],"possibilities":[10],"to":[11,43,78],"discover":[12],"novel":[13,29],"biomarkers":[14,104],"and":[15,39,82,125],"elucidate":[16],"cancer-related":[17,130],"complex":[18],"mechanisms":[19],"at":[20],"level.":[22],"In":[23],"this":[24],"paper,":[25],"we":[26],"propose":[27],"a":[28,55],"module-based":[30],"feature":[31,60],"selection":[32,61],"framework,":[33],"which":[34],"integrates":[35],"information":[38],"gene":[40,119],"expression":[41],"identify":[44],"biomarkers,":[45],"not":[46],"as":[47,51],"individual":[48,118],"genes":[49],"but":[50],"functional":[52],"modules.":[53],"Also,":[54],"large-scale":[56],"analysis":[57],"ensemble":[59],"concept":[62],"is":[63],"presented.":[64],"method":[66],"allows":[67],"combining":[68],"features":[69],"selected":[70,90],"from":[71,94],"multiple":[72],"runs":[73],"with":[74],"various":[75],"subsampling":[77],"increase":[79],"the":[80,86,101],"reliability":[81],"classification":[83,108],"accuracy":[84,109],"final":[87],"set":[88],"features.":[91],"results":[93],"four":[95],"breast":[96],"cancer":[97],"studies":[98],"demonstrate":[99],"that":[100],"identified":[102],"module":[103],"achieve:":[105],"i)":[106],"higher":[107],"in":[110,129],"independent":[111],"validation":[112],"datasets;":[113],"ii)":[114],"better":[115],"reproducibility":[116],"than":[117],"biomarkers;":[120],"iii)":[121],"improved":[122],"interpretability;":[124],"iv)":[126],"enhanced":[127],"enrichment":[128],"\u201cdisease":[131],"drivers\u201d.":[132]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
