{"id":"https://openalex.org/W2154203776","doi":"https://doi.org/10.1109/bibm.2010.5706540","title":"Enhanced reference guided assembly","display_name":"Enhanced reference guided assembly","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2154203776","doi":"https://doi.org/10.1109/bibm.2010.5706540","mag":"2154203776"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2010.5706540","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706540","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065218564","display_name":"Federica Cattonaro","orcid":"https://orcid.org/0000-0001-8819-7458"},"institutions":[{"id":"https://openalex.org/I4210155277","display_name":"Istituto di Genomica Applicata","ror":"https://ror.org/057w9fs93","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155277"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Federica Cattonaro","raw_affiliation_strings":["IGA Applied Genomics Institute, Udine, Italy"],"affiliations":[{"raw_affiliation_string":"IGA Applied Genomics Institute, Udine, Italy","institution_ids":["https://openalex.org/I4210155277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042115100","display_name":"Alberto Policriti","orcid":"https://orcid.org/0000-0001-8502-5896"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Policriti","raw_affiliation_strings":["DIMI, University of Udine, Udine, Italy"],"affiliations":[{"raw_affiliation_string":"DIMI, University of Udine, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006807738","display_name":"Francesco Vezzi","orcid":"https://orcid.org/0000-0002-0243-0018"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Vezzi","raw_affiliation_strings":["DIMI, University of Udine, Udine, Italy"],"affiliations":[{"raw_affiliation_string":"DIMI, University of Udine, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065218564"],"corresponding_institution_ids":["https://openalex.org/I4210155277"],"apc_list":null,"apc_paid":null,"fwci":0.6609,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.69282822,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"6031","issue":null,"first_page":"77","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11407","display_name":"Innovative Microfluidic and Catalytic Techniques Innovation","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9635999798774719,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.8090982437133789},{"id":"https://openalex.org/keywords/sanger-sequencing","display_name":"Sanger sequencing","score":0.6567741632461548},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6277011632919312},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4755368232727051},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4319920241832733},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41972413659095764},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4117681384086609},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21276602149009705},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1597658395767212},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11823716759681702},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11721992492675781}],"concepts":[{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.8090982437133789},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.6567741632461548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6277011632919312},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4755368232727051},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4319920241832733},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41972413659095764},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4117681384086609},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21276602149009705},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1597658395767212},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11823716759681702},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11721992492675781},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2010.5706540","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706540","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1600635751","https://openalex.org/W1841715584","https://openalex.org/W1972924519","https://openalex.org/W2068543706","https://openalex.org/W2097341408","https://openalex.org/W2110246558","https://openalex.org/W2141217788","https://openalex.org/W2158714788","https://openalex.org/W2160969485","https://openalex.org/W2161911831","https://openalex.org/W2166654698","https://openalex.org/W2616754551"],"related_works":["https://openalex.org/W2805859037","https://openalex.org/W2403609377","https://openalex.org/W2041048994","https://openalex.org/W4313342334","https://openalex.org/W4225751448","https://openalex.org/W4313584754","https://openalex.org/W2276490703","https://openalex.org/W3107980954","https://openalex.org/W3134891899","https://openalex.org/W3210327416"],"abstract_inverted_index":{"Next":[0],"Generation":[1],"Sequencing":[2],"has":[3],"totally":[4],"changed":[5],"genomics:":[6],"we":[7,47],"are":[8],"able":[9],"to":[10,23,68,78],"produce":[11],"huge":[12],"amounts":[13],"of":[14,41,60],"data":[15],"at":[16,54],"an":[17,80],"incredible":[18],"low":[19],"cost":[20],"if":[21],"compared":[22],"Sanger":[24],"sequencing.":[25],"Despite":[26],"this":[27,42,45],"some":[28],"old":[29],"problems":[30],"have":[31],"become":[32],"even":[33],"more":[34],"difficult,":[35],"de-novo":[36,56,70],"assembly":[37,57,71,75],"being":[38],"on":[39],"top":[40],"list.":[43],"In":[44],"paper":[46],"propose":[48],"a":[49,61],"novel":[50],"method":[51],"that":[52],"aims":[53],"improving":[55],"in":[58,76],"presence":[59],"closely":[62],"related":[63],"reference.":[64],"The":[65],"idea":[66],"is":[67],"combine":[69],"and":[72],"reference":[73],"guided":[74],"order":[77],"obtain":[79],"enhanced":[81],"assembly.":[82]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}