{"id":"https://openalex.org/W4200384548","doi":"https://doi.org/10.1109/bibe52308.2021.9635574","title":"In-silico Research Platform in the Cloud - Performance and Scalability Analysis","display_name":"In-silico Research Platform in the Cloud - Performance and Scalability Analysis","publication_year":2021,"publication_date":"2021-10-25","ids":{"openalex":"https://openalex.org/W4200384548","doi":"https://doi.org/10.1109/bibe52308.2021.9635574"},"language":"en","primary_location":{"id":"doi:10.1109/bibe52308.2021.9635574","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe52308.2021.9635574","pdf_url":null,"source":{"id":"https://openalex.org/S4363608533","display_name":"2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089092264","display_name":"Milo\u0161 Ivanovi\u0107","orcid":"https://orcid.org/0000-0002-8974-2267"},"institutions":[{"id":"https://openalex.org/I14245010","display_name":"University of Kragujevac","ror":"https://ror.org/04f7vj627","country_code":"RS","type":"education","lineage":["https://openalex.org/I14245010"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Milos Ivanovic","raw_affiliation_strings":["Faculty of Science, University of Kragujevac BIOIRC d.o.o., Kragujevac, Serbia"],"raw_orcid":"https://orcid.org/0000-0002-8974-2267","affiliations":[{"raw_affiliation_string":"Faculty of Science, University of Kragujevac BIOIRC d.o.o., Kragujevac, Serbia","institution_ids":["https://openalex.org/I14245010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031598052","display_name":"Andreja \u017divi\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I14245010","display_name":"University of Kragujevac","ror":"https://ror.org/04f7vj627","country_code":"RS","type":"education","lineage":["https://openalex.org/I14245010"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Andreja Zivic","raw_affiliation_strings":["Faculty of Science, University of Kragujevac BIOIRC d.o.o., Kragujevac, Serbia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science, University of Kragujevac BIOIRC d.o.o., Kragujevac, Serbia","institution_ids":["https://openalex.org/I14245010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063555173","display_name":"Nikolaos S. Tachos","orcid":"https://orcid.org/0000-0002-8627-6352"},"institutions":[{"id":"https://openalex.org/I194019607","display_name":"University of Ioannina","ror":"https://ror.org/01qg3j183","country_code":"GR","type":"education","lineage":["https://openalex.org/I194019607"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Nikolaos Tachos","raw_affiliation_strings":["University of Ioannina, Ioannina, Greece"],"raw_orcid":"https://orcid.org/0000-0002-8627-6352","affiliations":[{"raw_affiliation_string":"University of Ioannina, Ioannina, Greece","institution_ids":["https://openalex.org/I194019607"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048415437","display_name":"George Gois","orcid":null},"institutions":[{"id":"https://openalex.org/I194019607","display_name":"University of Ioannina","ror":"https://ror.org/01qg3j183","country_code":"GR","type":"education","lineage":["https://openalex.org/I194019607"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Gois","raw_affiliation_strings":["University of Ioannina, Ioannina, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ioannina, Ioannina, Greece","institution_ids":["https://openalex.org/I194019607"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006131395","display_name":"Nenad Filipovi\u0107","orcid":"https://orcid.org/0000-0001-9964-5615"},"institutions":[{"id":"https://openalex.org/I14245010","display_name":"University of Kragujevac","ror":"https://ror.org/04f7vj627","country_code":"RS","type":"education","lineage":["https://openalex.org/I14245010"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Nenad Filipovic","raw_affiliation_strings":["Faculty of Science, University of Kragujevac BIOIRC d.o.o., Kragujevac, Serbia"],"raw_orcid":"https://orcid.org/0000-0001-9964-5615","affiliations":[{"raw_affiliation_string":"Faculty of Science, University of Kragujevac BIOIRC d.o.o., Kragujevac, Serbia","institution_ids":["https://openalex.org/I14245010"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037813012","display_name":"Dimitrios I. Fotiadis","orcid":"https://orcid.org/0000-0002-7362-5082"},"institutions":[{"id":"https://openalex.org/I194019607","display_name":"University of Ioannina","ror":"https://ror.org/01qg3j183","country_code":"GR","type":"education","lineage":["https://openalex.org/I194019607"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Dimitrios I. Fotiadis","raw_affiliation_strings":["University of Ioannina, Ioannina, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ioannina, Ioannina, Greece","institution_ids":["https://openalex.org/I194019607"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9668999910354614,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8445618152618408},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.761721134185791},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7523163557052612},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7078468203544617},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7074484825134277},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.6131377220153809},{"id":"https://openalex.org/keywords/porting","display_name":"Porting","score":0.6071078181266785},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4920293986797333},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.4564509391784668},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4496128261089325},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4291880130767822},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35093018412590027},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2241537868976593},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19762587547302246}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8445618152618408},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.761721134185791},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7523163557052612},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7078468203544617},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7074484825134277},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.6131377220153809},{"id":"https://openalex.org/C106251023","wikidata":"https://www.wikidata.org/wiki/Q851989","display_name":"Porting","level":3,"score":0.6071078181266785},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4920293986797333},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.4564509391784668},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4496128261089325},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4291880130767822},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35093018412590027},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2241537868976593},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19762587547302246},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe52308.2021.9635574","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe52308.2021.9635574","pdf_url":null,"source":{"id":"https://openalex.org/S4363608533","display_name":"2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W133389366","https://openalex.org/W844253406","https://openalex.org/W2051643755","https://openalex.org/W2115765852","https://openalex.org/W2122425433","https://openalex.org/W2346143774","https://openalex.org/W2797834809","https://openalex.org/W2808343649","https://openalex.org/W2901318438","https://openalex.org/W2923525281","https://openalex.org/W4239091294"],"related_works":["https://openalex.org/W1820309981","https://openalex.org/W2375332572","https://openalex.org/W28826848","https://openalex.org/W3124707092","https://openalex.org/W3123383020","https://openalex.org/W4312942606","https://openalex.org/W2912579397","https://openalex.org/W2152694830","https://openalex.org/W2373446736","https://openalex.org/W3085855301"],"abstract_inverted_index":{"The":[0,49,65,103,113,130],"paper":[1],"describes":[2],"experiences":[3],"from":[4],"building":[5],"and":[6,23,30,44,60,100],"cloudification":[7,53],"of":[8,26,33,52,70,94,109,115,145],"the":[9,21,37,41,45,71,73,86,116,122,136],"in-silico":[10,16],"research":[11,91],"platform":[12],"SilicoFCM,":[13],"an":[14],"innovative":[15],"clinical":[17,47],"trials'":[18],"solution":[19],"for":[20],"design":[22],"functional":[24],"optimization":[25],"whole":[27],"heart":[28],"performance":[29,87,108],"monitoring":[31],"effectiveness":[32],"pharmacological":[34],"treatment,":[35],"with":[36],"aim":[38,51,114],"to":[39,55,80,120],"reduce":[40,61],"animal":[42],"studies":[43],"human":[46],"trials.":[48],"primary":[50],"was":[54,77,106,119],"prove":[56],"portability,":[57],"improve":[58],"scalability":[59],"long-term":[62],"infrastructure":[63,124,137],"costs.":[64],"most":[66],"computationally":[67],"expensive":[68],"part":[69],"platform,":[72],"scientific":[74],"workflow":[75,111],"manager,":[76],"successfully":[78],"ported":[79],"Amazon":[81],"Web":[82],"Services.":[83],"We":[84],"benchmarked":[85],"on":[88],"three":[89],"distinct":[90],"workflows,":[92],"each":[93],"them":[95],"having":[96],"different":[97],"resource":[98],"requirements":[99],"execution":[101],"time.":[102],"first":[104],"benchmark":[105,131],"pure":[107],"running":[110],"sequentially.":[112],"second":[117],"test":[118],"stress-test":[121],"underlying":[123],"by":[125],"submitting":[126],"multiple":[127],"workflows":[128],"simultaneously.":[129],"results":[132],"are":[133],"promising,":[134],"painting":[135],"launching":[138],"overhead":[139],"almost":[140],"negligible":[141],"in":[142],"this":[143],"kind":[144],"heavy":[146],"computational":[147],"use-case.":[148]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
