{"id":"https://openalex.org/W2219456269","doi":"https://doi.org/10.1109/bibe.2015.7367663","title":"Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines","display_name":"Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2219456269","doi":"https://doi.org/10.1109/bibe.2015.7367663","mag":"2219456269"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2015.7367663","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2015.7367663","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036247906","display_name":"Ivan Milankovi\u0107","orcid":"https://orcid.org/0000-0001-8728-8171"},"institutions":[{"id":"https://openalex.org/I14245010","display_name":"University of Kragujevac","ror":"https://ror.org/04f7vj627","country_code":"RS","type":"education","lineage":["https://openalex.org/I14245010"]}],"countries":["RS"],"is_corresponding":true,"raw_author_name":"Ivan Milankovic","raw_affiliation_strings":["Faculty of Engineering, University of Kragujevac, Kragujevac, Serbia","Research and Development Center for Bioengineering, Kragujevac, Serbia"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Kragujevac, Kragujevac, Serbia","institution_ids":["https://openalex.org/I14245010"]},{"raw_affiliation_string":"Research and Development Center for Bioengineering, Kragujevac, Serbia","institution_ids":["https://openalex.org/I14245010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018491304","display_name":"Aleksandar Peuli\u0107","orcid":"https://orcid.org/0000-0003-0416-4056"},"institutions":[{"id":"https://openalex.org/I14245010","display_name":"University of Kragujevac","ror":"https://ror.org/04f7vj627","country_code":"RS","type":"education","lineage":["https://openalex.org/I14245010"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Aleksandar Peulic","raw_affiliation_strings":["Faculty of Engineering, University of Kragujevac, Kragujevac, Serbia"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Kragujevac, Kragujevac, Serbia","institution_ids":["https://openalex.org/I14245010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038105546","display_name":"Alexandra B. Ysasi","orcid":"https://orcid.org/0000-0002-2932-870X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandra B. Ysasi","raw_affiliation_strings":["Laboratory of Adaptive and Regenerative Biology, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts"],"affiliations":[{"raw_affiliation_string":"Laboratory of Adaptive and Regenerative Biology, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036089918","display_name":"Willi L. Wagner","orcid":"https://orcid.org/0000-0002-2748-5429"},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Willi L. Wagner","raw_affiliation_strings":["Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016648702","display_name":"Andreas Pabst","orcid":"https://orcid.org/0000-0003-4841-7203"},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas M. Pabst","raw_affiliation_strings":["Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086646925","display_name":"Maximilian Ackermann","orcid":"https://orcid.org/0000-0001-9996-2477"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maximilian Ackermann","raw_affiliation_strings":["Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047964570","display_name":"Jan P. Houdek","orcid":null},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Houdek","raw_affiliation_strings":["Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050803141","display_name":"Sonja F\u00f6hst","orcid":"https://orcid.org/0000-0001-9927-819X"},"institutions":[{"id":"https://openalex.org/I3019415892","display_name":"Fraunhofer Institute for Industrial Mathematics","ror":"https://ror.org/019hjw009","country_code":"DE","type":"facility","lineage":["https://openalex.org/I3019415892","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sonja F\u00f6hst","raw_affiliation_strings":["Fraunhofer Institute for Industrial Mathematics, Kaiserslautern, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Industrial Mathematics, Kaiserslautern, Germany","institution_ids":["https://openalex.org/I3019415892"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013315084","display_name":"Steven J. Mentzer","orcid":"https://orcid.org/0000-0003-1496-6044"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven J. Mentzer","raw_affiliation_strings":["Laboratory of Adaptive and Regenerative Biology, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts"],"affiliations":[{"raw_affiliation_string":"Laboratory of Adaptive and Regenerative Biology, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064306593","display_name":"Moritz A. Konerding","orcid":null},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Moritz A. Konerding","raw_affiliation_strings":["Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006131395","display_name":"Nenad Filipovi\u0107","orcid":"https://orcid.org/0000-0001-9964-5615"},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nenad Filipovic","raw_affiliation_strings":["Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional and Clinical Anatomy, University Medical Center of Johannes Gutenberg-University, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016346244","display_name":"Akira Tsuda","orcid":"https://orcid.org/0000-0002-9201-0681"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Akira Tsuda","raw_affiliation_strings":["Molecular and Integrative Physiological Sciences, Harvard School of Public Health, Boston, Massachusetts"],"affiliations":[{"raw_affiliation_string":"Molecular and Integrative Physiological Sciences, Harvard School of Public Health, Boston, Massachusetts","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5036247906"],"corresponding_institution_ids":["https://openalex.org/I14245010"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.11386553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dataflow","display_name":"Dataflow","score":0.9411472082138062},{"id":"https://openalex.org/keywords/thresholding","display_name":"Thresholding","score":0.800039529800415},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7361263036727905},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.720227837562561},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6387162208557129},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.634853720664978},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.616532564163208},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.5983600616455078},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3661128878593445},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3469467759132385},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2371821403503418}],"concepts":[{"id":"https://openalex.org/C96324660","wikidata":"https://www.wikidata.org/wiki/Q205446","display_name":"Dataflow","level":2,"score":0.9411472082138062},{"id":"https://openalex.org/C191178318","wikidata":"https://www.wikidata.org/wiki/Q2256906","display_name":"Thresholding","level":3,"score":0.800039529800415},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7361263036727905},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.720227837562561},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6387162208557129},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.634853720664978},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.616532564163208},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.5983600616455078},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3661128878593445},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3469467759132385},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2371821403503418},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibe.2015.7367663","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2015.7367663","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE)","raw_type":"proceedings-article"},{"id":"pmh:oai:gery.gef.bg.ac.rs:123456789/732","is_oa":false,"landing_page_url":"https://hdl.handle.net/21.15107/rcub_gery_732","pdf_url":null,"source":{"id":"https://openalex.org/S4306402471","display_name":"Faculty of Geography (University of Belgrade)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4068193","host_organization_name":"University of Belgrade","host_organization_lineage":["https://openalex.org/I4068193"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015","raw_type":"conferenceObject"},{"id":"pmh:oai:publica.fraunhofer.de:publica/393733","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/393733","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322729","display_name":"Ministarstvo Prosvete, Nauke i Tehnolo\u0161kog Razvoja","ror":"https://ror.org/01znas443"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W570130807","https://openalex.org/W571250184","https://openalex.org/W1965512548","https://openalex.org/W1985213461","https://openalex.org/W1989567320","https://openalex.org/W2009358844","https://openalex.org/W2013417407","https://openalex.org/W2023428456","https://openalex.org/W2025963248","https://openalex.org/W2037272310","https://openalex.org/W2041242068","https://openalex.org/W2136725561","https://openalex.org/W2151708403","https://openalex.org/W2158536086","https://openalex.org/W2164064042","https://openalex.org/W2547435065","https://openalex.org/W6616145295","https://openalex.org/W6616302325"],"related_works":["https://openalex.org/W2293118914","https://openalex.org/W2998381397","https://openalex.org/W4236419692","https://openalex.org/W3167919718","https://openalex.org/W4251718783","https://openalex.org/W2171015181","https://openalex.org/W4239447582","https://openalex.org/W1484403103","https://openalex.org/W2521947294","https://openalex.org/W2907307640"],"abstract_inverted_index":{"Image":[0],"filtering":[1,23],"is":[2,40],"one":[3],"of":[4,37],"the":[5,32,48],"most":[6],"common":[7],"and":[8,28,35,65],"important":[9],"tasks":[10],"in":[11],"image":[12,18],"processing":[13,19],"applications.":[14],"In":[15],"this":[16],"paper,":[17],"using":[20],"a":[21],"mean":[22],"algorithm":[24,72],"combined":[25],"with":[26],"thresholding":[27],"binarization":[29],"algorithms":[30,43],"for":[31],"3D":[33],"visualization":[34],"analysis":[36],"murine":[38],"lungs":[39],"explained.":[41],"These":[42],"are":[44],"then":[45],"mapped":[46],"on":[47],"Maxler's":[49],"MAX2336B":[50],"Dataflow":[51],"Engine":[52],"(DFE)":[53],"to":[54,77],"significantly":[55],"increase":[56],"calculation":[57,73,81],"speed.":[58,82],"Several":[59],"different":[60,68],"DFE":[61],"configurations":[62],"were":[63],"tested":[64],"each":[66],"yielded":[67],"performance":[69],"characteristics.":[70],"Optimal":[71],"speed":[74],"was":[75],"up":[76],"30":[78],"fold":[79],"baseline":[80]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}