{"id":"https://openalex.org/W2072062223","doi":"https://doi.org/10.1109/bibe.2013.6701702","title":"Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations","display_name":"Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2072062223","doi":"https://doi.org/10.1109/bibe.2013.6701702","mag":"2072062223"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2013.6701702","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2013.6701702","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074094001","display_name":"Pietro Pinoli","orcid":"https://orcid.org/0000-0001-9786-2851"},"institutions":[{"id":"https://openalex.org/I4210142020","display_name":"Consorzio di Bioingegneria e Informatica Medica","ror":"https://ror.org/044w95594","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210142020"]},{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pietro Pinoli","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Italy","Dipt. di Elettron., Inf. e Bioingegneria, Politec. di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Italy","institution_ids":["https://openalex.org/I4210142020"]},{"raw_affiliation_string":"Dipt. di Elettron., Inf. e Bioingegneria, Politec. di Milano, Milan, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011556172","display_name":"Davide Chicco","orcid":"https://orcid.org/0000-0001-9655-7142"},"institutions":[{"id":"https://openalex.org/I4210142020","display_name":"Consorzio di Bioingegneria e Informatica Medica","ror":"https://ror.org/044w95594","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210142020"]},{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Chicco","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Italy","Dipt. di Elettron., Inf. e Bioingegneria, Politec. di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Italy","institution_ids":["https://openalex.org/I4210142020"]},{"raw_affiliation_string":"Dipt. di Elettron., Inf. e Bioingegneria, Politec. di Milano, Milan, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085346183","display_name":"Marco Masseroli","orcid":"https://orcid.org/0000-0003-2574-1174"},"institutions":[{"id":"https://openalex.org/I4210142020","display_name":"Consorzio di Bioingegneria e Informatica Medica","ror":"https://ror.org/044w95594","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210142020"]},{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Masseroli","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Italy","Dipt. di Elettron., Inf. e Bioingegneria, Politec. di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Italy","institution_ids":["https://openalex.org/I4210142020"]},{"raw_affiliation_string":"Dipt. di Elettron., Inf. e Bioingegneria, Politec. di Milano, Milan, Italy","institution_ids":["https://openalex.org/I93860229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7954,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.84785188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.7451422214508057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7380735874176025},{"id":"https://openalex.org/keywords/weighting","display_name":"Weighting","score":0.7064539194107056},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5975562930107117},{"id":"https://openalex.org/keywords/singular-value-decomposition","display_name":"Singular value decomposition","score":0.5344369411468506},{"id":"https://openalex.org/keywords/latent-semantic-analysis","display_name":"Latent semantic analysis","score":0.5318692922592163},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5230542421340942},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4881053864955902},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.45871925354003906},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.417240172624588},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4115092158317566},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37311577796936035},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1535879373550415},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07034510374069214}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.7451422214508057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7380735874176025},{"id":"https://openalex.org/C183115368","wikidata":"https://www.wikidata.org/wiki/Q856577","display_name":"Weighting","level":2,"score":0.7064539194107056},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5975562930107117},{"id":"https://openalex.org/C22789450","wikidata":"https://www.wikidata.org/wiki/Q420904","display_name":"Singular value decomposition","level":2,"score":0.5344369411468506},{"id":"https://openalex.org/C170133592","wikidata":"https://www.wikidata.org/wiki/Q1806883","display_name":"Latent semantic analysis","level":2,"score":0.5318692922592163},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5230542421340942},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4881053864955902},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.45871925354003906},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.417240172624588},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4115092158317566},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37311577796936035},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1535879373550415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07034510374069214},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibe.2013.6701702","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2013.6701702","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:boa.unimib.it:10281/435419","is_oa":false,"landing_page_url":"https://hdl.handle.net/10281/435419","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:re.public.polimi.it:11311/765665","is_oa":false,"landing_page_url":"http://hdl.handle.net/11311/765665","pdf_url":null,"source":{"id":"https://openalex.org/S4306400312","display_name":"Virtual Community of Pathological Anatomy (University of Castilla La Mancha)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79189158","host_organization_name":"University of Castilla-La Mancha","host_organization_lineage":["https://openalex.org/I79189158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1597538863","https://openalex.org/W1912057618","https://openalex.org/W1956559956","https://openalex.org/W2049633694","https://openalex.org/W2051678411","https://openalex.org/W2107743791","https://openalex.org/W2124743056","https://openalex.org/W2168662600","https://openalex.org/W2325227998","https://openalex.org/W3153661842","https://openalex.org/W4233135949","https://openalex.org/W7048738093"],"related_works":["https://openalex.org/W2180954594","https://openalex.org/W2361861616","https://openalex.org/W2052835778","https://openalex.org/W2420905679","https://openalex.org/W2384498496","https://openalex.org/W2147688565","https://openalex.org/W1580193008","https://openalex.org/W2108316317","https://openalex.org/W2145819623","https://openalex.org/W2136202239"],"abstract_inverted_index":{"Genomic":[0],"annotations":[1,51,127],"with":[2],"functional":[3,109,133],"controlled":[4],"terms,":[5],"such":[6],"as":[7,114],"the":[8,26,47,62,66,103,117,126,136],"Gene":[9],"Ontology":[10],"(GO)":[11],"ones,":[12],"are":[13,20,41],"paramount":[14],"in":[15,72],"modern":[16],"biology.":[17],"Yet,":[18],"they":[19],"known":[21],"to":[22,32,43,74,80,116,131],"be":[23,33,53],"incomplete,":[24],"since":[25],"current":[27],"biological":[28],"knowledge":[29],"is":[30],"far":[31],"definitive.":[34],"In":[35,56,88],"this":[36,89],"scenario,":[37],"computational":[38],"methods":[39],"that":[40,97,122],"able":[42],"support":[44],"and":[45,108],"quicken":[46],"curation":[48],"of":[49,64,96,128,138],"these":[50],"can":[52],"very":[54],"useful.":[55],"a":[57,93],"previous":[58],"work,":[59],"we":[60,91,123],"discussed":[61],"benefits":[63],"using":[65,112],"Probabilistic":[67],"Latent":[68],"Semantic":[69],"Analysis":[70],"algorithm":[71],"order":[73],"predict":[75],"novel":[76],"GO":[77,132],"annotations,":[78],"compared":[79],"some":[81],"Singular":[82],"Value":[83],"Decomposition":[84],"(SVD)":[85],"based":[86],"approaches.":[87],"paper,":[90],"propose":[92],"further":[94],"enhancement":[95],"method,":[98],"which":[99],"aims":[100],"at":[101],"weighting":[102],"available":[104],"associations":[105],"between":[106],"genes":[107,130],"terms":[110,134],"before":[111],"them":[113],"input":[115],"predictive":[118],"system.":[119],"The":[120],"tests":[121],"performed":[124],"on":[125],"human":[129],"showed":[135],"efficacy":[137],"our":[139],"approach.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
