{"id":"https://openalex.org/W2033838136","doi":"https://doi.org/10.1109/bibe.2013.6701698","title":"Molecular clustering via knowledge mining from biomedical scientific corpora","display_name":"Molecular clustering via knowledge mining from biomedical scientific corpora","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2033838136","doi":"https://doi.org/10.1109/bibe.2013.6701698","mag":"2033838136"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2013.6701698","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2013.6701698","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/2567365","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011212857","display_name":"Panagiotis Hasapis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]}],"countries":["LU"],"is_corresponding":true,"raw_author_name":"Panagiotis Hasapis","raw_affiliation_strings":["INTRASOFT International, Luxembourg","INTRASOFT Int., Luxembourg, Luxembourg"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"INTRASOFT Int., Luxembourg, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015178106","display_name":"Dimitris Ntalaperas","orcid":"https://orcid.org/0000-0001-7560-3912"},"institutions":[{"id":"https://openalex.org/I4210162980","display_name":"Ubitech (Greece)","ror":"https://ror.org/05dvp4993","country_code":"GR","type":"company","lineage":["https://openalex.org/I4210162980"]},{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]}],"countries":["GR","LU"],"is_corresponding":false,"raw_author_name":"Dimitrios Ntalaperas","raw_affiliation_strings":["INTRASOFT International, Luxembourg","UBITECH Res., Athens, Greece"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"UBITECH Res., Athens, Greece","institution_ids":["https://openalex.org/I4210162980"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084040777","display_name":"Christos Kannas","orcid":"https://orcid.org/0000-0001-7312-8193"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]},{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]}],"countries":["CY","LU"],"is_corresponding":false,"raw_author_name":"Christos C. Kannas","raw_affiliation_strings":["INTRASOFT International, Luxembourg","Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016073698","display_name":"Aristos Aristodimou","orcid":"https://orcid.org/0000-0003-1949-7785"},"institutions":[{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]},{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY","LU"],"is_corresponding":false,"raw_author_name":"Aristos Aristodimou","raw_affiliation_strings":["INTRASOFT International, Luxembourg","Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034689967","display_name":"\u0394. \u0391\u03bb\u03b5\u03be\u03ac\u03bd\u03b4\u03c1\u03bf\u03c5","orcid":"https://orcid.org/0000-0002-2712-2089"},"institutions":[{"id":"https://openalex.org/I4210162980","display_name":"Ubitech (Greece)","ror":"https://ror.org/05dvp4993","country_code":"GR","type":"company","lineage":["https://openalex.org/I4210162980"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Dimitrios Alexandrou","raw_affiliation_strings":["UBITECH Research, Athens","UBITECH Res., Athens, Greece"],"affiliations":[{"raw_affiliation_string":"UBITECH Research, Athens","institution_ids":["https://openalex.org/I4210162980"]},{"raw_affiliation_string":"UBITECH Res., Athens, Greece","institution_ids":["https://openalex.org/I4210162980"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042419626","display_name":"Thanassis Bouras","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]},{"id":"https://openalex.org/I4210162980","display_name":"Ubitech (Greece)","ror":"https://ror.org/05dvp4993","country_code":"GR","type":"company","lineage":["https://openalex.org/I4210162980"]}],"countries":["GR","LU"],"is_corresponding":false,"raw_author_name":"Thanassis Bouras","raw_affiliation_strings":["INTRASOFT International, Luxembourg","UBITECH Res., Athens, Greece"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"UBITECH Res., Athens, Greece","institution_ids":["https://openalex.org/I4210162980"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042815567","display_name":"Christos Georgousopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Christos Georgousopoulos","raw_affiliation_strings":["INTRASOFT International, Luxembourg","INTRASOFT Int., Luxembourg, Luxembourg"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"INTRASOFT Int., Luxembourg, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079479859","display_name":"\u0386\u03b8\u03c9\u03c2 \u0391\u03bd\u03c4\u03c9\u03bd\u03b9\u03ac\u03b4\u03b7\u03c2","orcid":"https://orcid.org/0000-0002-5789-5103"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]},{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]}],"countries":["CY","LU"],"is_corresponding":false,"raw_author_name":"Athos Antoniades","raw_affiliation_strings":["INTRASOFT International, Luxembourg","Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079839426","display_name":"Constantinos S. Pattichis","orcid":"https://orcid.org/0000-0003-1271-8151"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Constantinos S. Pattichis","raw_affiliation_strings":["Panepistemio Kyprou, Nicosia, Nicosia, CY","Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Panepistemio Kyprou, Nicosia, Nicosia, CY","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017936206","display_name":"Andreas I. Constantinou","orcid":"https://orcid.org/0000-0003-0365-1821"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]},{"id":"https://openalex.org/I4210134421","display_name":"INTRASOFT International (Luxembourg)","ror":"https://ror.org/02zn9x324","country_code":"LU","type":"company","lineage":["https://openalex.org/I4210134421","https://openalex.org/I86100027"]}],"countries":["CY","LU"],"is_corresponding":false,"raw_author_name":"Andreas Constantinou","raw_affiliation_strings":["INTRASOFT International, Luxembourg","Dept. of Biol. Sci., Univ. of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"INTRASOFT International, Luxembourg","institution_ids":["https://openalex.org/I4210134421"]},{"raw_affiliation_string":"Dept. of Biol. Sci., Univ. of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5011212857"],"corresponding_institution_ids":["https://openalex.org/I4210134421"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.07673437,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"9","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9302999973297119,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7773122191429138},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7601258754730225},{"id":"https://openalex.org/keywords/argumentation-theory","display_name":"Argumentation theory","score":0.5523175597190857},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5084318518638611},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.49209851026535034},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.4315025508403778},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.42983296513557434},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4195573925971985},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3915765583515167},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32791921496391296},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1312316358089447},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.09505718946456909},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.073062002658844}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7773122191429138},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7601258754730225},{"id":"https://openalex.org/C65059942","wikidata":"https://www.wikidata.org/wiki/Q270105","display_name":"Argumentation theory","level":2,"score":0.5523175597190857},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5084318518638611},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.49209851026535034},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.4315025508403778},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.42983296513557434},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4195573925971985},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3915765583515167},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32791921496391296},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1312316358089447},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.09505718946456909},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.073062002658844},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2013.6701698","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2013.6701698","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:2567365","is_oa":true,"landing_page_url":"https://zenodo.org/record/2567365","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"4","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:2567365","is_oa":true,"landing_page_url":"https://zenodo.org/record/2567365","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"4","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.800000011920929,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1582368508","display_name":"A SOCIAL COLLABORATIVE WORKING SPACE SEMANTICALLY INTERLINKING BIOMEDICAL RESEARCHERS, KNOWLEDGE AND DATA FOR THE DESIGN AND EXECUTION OF IN-SILICO MODELS AND EXPERIMENTS IN CANCER CHEMOPREVENTION","funder_award_id":"270139","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3625708401","display_name":"A NEXT-GENERATION, SECURE LINKED DATA MEDICAL INFORMATION SPACE FOR SEMANTICALLY-INTERCONNECTING ELECTRONIC HEALTH RECORDS AND CLINICAL TRIALS SYSTEMS ADVANCING PATIENTS SAFETY IN CLINICAL RESEARCH","funder_award_id":"288328","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W432197935","https://openalex.org/W1531524766","https://openalex.org/W1541066760","https://openalex.org/W1975147762","https://openalex.org/W1988357837","https://openalex.org/W1990699137","https://openalex.org/W2006575776","https://openalex.org/W2015191210","https://openalex.org/W2036387645","https://openalex.org/W2040298842","https://openalex.org/W2044834685","https://openalex.org/W2089923519","https://openalex.org/W2120292247","https://openalex.org/W2132784310","https://openalex.org/W2138275182","https://openalex.org/W2177658341","https://openalex.org/W2426119782","https://openalex.org/W6632361481","https://openalex.org/W6660428079","https://openalex.org/W6991245340"],"related_works":["https://openalex.org/W2141332034","https://openalex.org/W4256185029","https://openalex.org/W4388437769","https://openalex.org/W2016355461","https://openalex.org/W2386938185","https://openalex.org/W2068844411","https://openalex.org/W1986386500","https://openalex.org/W2793744252","https://openalex.org/W1516746680","https://openalex.org/W2072284316"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"an":[3],"architecture":[4],"is":[5],"presented":[6],"that":[7,14,54,86],"allows":[8],"the":[9,80,98],"extraction":[10],"of":[11,46,100],"argumentation":[12,39],"clauses":[13],"might":[15],"exist":[16],"in":[17,19,42,59],"publications,":[18],"order":[20],"to":[21,34,38,68,74,83,89,92,97],"perform":[22],"molecular":[23,76],"clustering":[24,77],"on":[25],"referenced":[26],"molecules.":[27],"Grammar":[28],"rules":[29],"are":[30,49,64,87],"defined":[31],"and":[32,72],"used":[33],"identify":[35],"sentences":[36],"corresponding":[37],"being":[40],"present":[41],"publications.":[43],"The":[44],"references":[45],"those":[47],"molecules":[48,85],"then":[50,73],"compiled":[51],"as":[52,66],"lists":[53,63],"include":[55],"their":[56],"structure":[57],"definition":[58],"SMILES":[60],"format.":[61],"These":[62],"given":[65],"input":[67],"virtual":[69],"screening":[70],"tools":[71],"a":[75],"tool,":[78],"with":[79],"ultimate":[81],"goal":[82],"classify":[84],"known":[88],"be":[90],"prone":[91],"specific":[93],"diseases,":[94],"thus":[95],"leading":[96],"discovery":[99],"new":[101],"drugs.":[102]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
