{"id":"https://openalex.org/W2004782754","doi":"https://doi.org/10.1109/bibe.2013.6701609","title":"Identification and correction of substitution errors in Moleculo long reads","display_name":"Identification and correction of substitution errors in Moleculo long reads","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2004782754","doi":"https://doi.org/10.1109/bibe.2013.6701609","mag":"2004782754"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2013.6701609","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2013.6701609","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102032568","display_name":"Jared Price","orcid":null},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jared Price","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT","[Department of Computer Science, Brigham Young University, Provo, UT, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"[Department of Computer Science, Brigham Young University, Provo, UT, USA]","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019896418","display_name":"J. A. Ward","orcid":null},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]},{"id":"https://openalex.org/I4210112372","display_name":"Driscoll Children's Hospital","ror":"https://ror.org/01x3f1613","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210112372"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judson Ward","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT","Dept. of Mol. Biol., Driscoll's, Watsonville, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Dept. of Mol. Biol., Driscoll's, Watsonville, CA, USA","institution_ids":["https://openalex.org/I4210112372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005156644","display_name":"Joshua A. Udall","orcid":"https://orcid.org/0000-0003-0978-4764"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Udall","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT","Dept. of Plant & Wildlife Sci., Brigham Young Univ., Provo, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Dept. of Plant & Wildlife Sci., Brigham Young Univ., Provo, UT, USA","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064637082","display_name":"Quinn Snell","orcid":"https://orcid.org/0000-0002-0579-612X"},"institutions":[{"id":"https://openalex.org/I4210112372","display_name":"Driscoll Children's Hospital","ror":"https://ror.org/01x3f1613","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210112372"]},{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quinn Snell","raw_affiliation_strings":["Department of Molecular Biology, Driscoll's, Wat-sonville, CA","[Department of Computer Science, Brigham Young University, Provo, UT, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Driscoll's, Wat-sonville, CA","institution_ids":["https://openalex.org/I4210112372"]},{"raw_affiliation_string":"[Department of Computer Science, Brigham Young University, Provo, UT, USA]","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058435710","display_name":"Mark Clement","orcid":"https://orcid.org/0000-0003-4902-3521"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Clement","raw_affiliation_strings":["Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT","[Department of Computer Science, Brigham Young University, Provo, UT, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"[Department of Computer Science, Brigham Young University, Provo, UT, USA]","institution_ids":["https://openalex.org/I100005738"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5102032568"],"corresponding_institution_ids":["https://openalex.org/I100005738"],"apc_list":null,"apc_paid":null,"fwci":0.1462,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55011382,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.868444561958313},{"id":"https://openalex.org/keywords/word-error-rate","display_name":"Word error rate","score":0.5737850069999695},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5696703195571899},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5316558480262756},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.5067434906959534},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4901033341884613},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4702509641647339},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4445614814758301},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.19901901483535767},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18708816170692444},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15578705072402954},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12048035860061646}],"concepts":[{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.868444561958313},{"id":"https://openalex.org/C40969351","wikidata":"https://www.wikidata.org/wiki/Q3516228","display_name":"Word error rate","level":2,"score":0.5737850069999695},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5696703195571899},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5316558480262756},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.5067434906959534},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4901033341884613},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4702509641647339},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4445614814758301},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.19901901483535767},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18708816170692444},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15578705072402954},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12048035860061646},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2013.6701609","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2013.6701609","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2022986961","https://openalex.org/W2041126213","https://openalex.org/W2133956160","https://openalex.org/W2136651963","https://openalex.org/W2157888653","https://openalex.org/W2541311497","https://openalex.org/W4285719527","https://openalex.org/W6729373107"],"related_works":["https://openalex.org/W2379444625","https://openalex.org/W2393147081","https://openalex.org/W2575869988","https://openalex.org/W4308647020","https://openalex.org/W2370088286","https://openalex.org/W2385568494","https://openalex.org/W2912058948","https://openalex.org/W2588424405","https://openalex.org/W2042068218","https://openalex.org/W168676510"],"abstract_inverted_index":{"Moleculo":[0,80],"DNA":[1],"sequencing":[2],"technology":[3],"provides":[4],"extremely":[5],"accurate,":[6],"phased,":[7],"reads":[8,67],"having":[9],"an":[10,61,107],"average":[11],"length":[12],"of":[13,26,41,50,60,94,106,112],"over":[14],"4,000":[15],"bp.":[16],"Very":[17],"little":[18],"is":[19],"yet":[20],"known":[21],"about":[22],"the":[23,35,58,92,104,110],"precise":[24],"characteristics":[25],"these":[27,42,66],"reads.":[28],"We":[29,52,88],"estimate":[30],"a":[31,79,113],"lower":[32],"bound":[33],"for":[34,47,65],"single":[36,75],"nucleotide":[37,76],"substitution":[38,95],"error":[39,62,108],"rate":[40],"reads,":[43],"and":[44],"provide":[45],"probabilities":[46],"each":[48],"type":[49],"substitution.":[51],"also":[53,89],"present":[54],"preliminary":[55],"work":[56],"on":[57],"development":[59],"correction":[63],"algorithm":[64],"which":[68],"in":[69,78],"its":[70],"current":[71],"implementation":[72],"corrects":[73],"74,030":[74],"errors":[77,96],"data":[81],"set":[82],"obtained":[83],"from":[84],"Rubus":[85],"idaeus":[86],"`Heritage'.":[87],"demonstrate":[90],"that":[91],"pattern":[93],"shows":[97],"no":[98],"significant":[99],"bias":[100],"with":[101],"respect":[102],"to":[103],"position":[105],"along":[109],"body":[111],"read.":[114]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
