{"id":"https://openalex.org/W1982901282","doi":"https://doi.org/10.1109/bibe.2012.6399736","title":"Bio-Linux as a tool for bioinformatics training","display_name":"Bio-Linux as a tool for bioinformatics training","publication_year":2012,"publication_date":"2012-11-01","ids":{"openalex":"https://openalex.org/W1982901282","doi":"https://doi.org/10.1109/bibe.2012.6399736","mag":"1982901282"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2012.6399736","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2012.6399736","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 12th International Conference on Bioinformatics &amp; Bioengineering (BIBE)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060841909","display_name":"Tim Booth","orcid":"https://orcid.org/0000-0003-2470-9519"},"institutions":[{"id":"https://openalex.org/I4210092773","display_name":"UK Centre for Ecology & Hydrology","ror":"https://ror.org/00pggkr55","country_code":"GB","type":"funder","lineage":["https://openalex.org/I4210092773"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Timothy Booth","raw_affiliation_strings":["Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom","institution_ids":["https://openalex.org/I4210092773"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084794615","display_name":"Mesude Bicak","orcid":"https://orcid.org/0000-0002-4546-9801"},"institutions":[{"id":"https://openalex.org/I4210092773","display_name":"UK Centre for Ecology & Hydrology","ror":"https://ror.org/00pggkr55","country_code":"GB","type":"funder","lineage":["https://openalex.org/I4210092773"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mesude Bicak","raw_affiliation_strings":["Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom","institution_ids":["https://openalex.org/I4210092773"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009431634","display_name":"Hyun S. Gweon","orcid":"https://orcid.org/0000-0002-6218-6301"},"institutions":[{"id":"https://openalex.org/I4210092773","display_name":"UK Centre for Ecology & Hydrology","ror":"https://ror.org/00pggkr55","country_code":"GB","type":"funder","lineage":["https://openalex.org/I4210092773"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hyun Soon Gweon","raw_affiliation_strings":["Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom","institution_ids":["https://openalex.org/I4210092773"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068248399","display_name":"Dawn Field","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092773","display_name":"UK Centre for Ecology & Hydrology","ror":"https://ror.org/00pggkr55","country_code":"GB","type":"funder","lineage":["https://openalex.org/I4210092773"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dawn Field","raw_affiliation_strings":["Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Wallingford, United Kingdom","institution_ids":["https://openalex.org/I4210092773"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006951727","display_name":"Enis Afgan","orcid":"https://orcid.org/0000-0003-0922-6711"},"institutions":[{"id":"https://openalex.org/I4210123216","display_name":"Rudjer Boskovic Institute","ror":"https://ror.org/02mw21745","country_code":"HR","type":"facility","lineage":["https://openalex.org/I4210123216"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Enis Afgan","raw_affiliation_strings":["Center for Informatics and Computing, Ruder Bo\u0161skovi\u0107c Institute Zagreb, Zagreb, Croatia","Center for Informatics and Computing, Ru\u0111er Bo\u0161kovi\u0107 Institute, Zagreb, Croatia"],"affiliations":[{"raw_affiliation_string":"Center for Informatics and Computing, Ruder Bo\u0161skovi\u0107c Institute Zagreb, Zagreb, Croatia","institution_ids":[]},{"raw_affiliation_string":"Center for Informatics and Computing, Ru\u0111er Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5060841909"],"corresponding_institution_ids":["https://openalex.org/I4210092773"],"apc_list":null,"apc_paid":null,"fwci":1.3883,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.86802584,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"578","last_page":"582"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8074141144752502},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.707480251789093},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6162281036376953},{"id":"https://openalex.org/keywords/workstation","display_name":"Workstation","score":0.5952425599098206},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5427144169807434},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.43848109245300293},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33422860503196716},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27928435802459717}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8074141144752502},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.707480251789093},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6162281036376953},{"id":"https://openalex.org/C67953723","wikidata":"https://www.wikidata.org/wiki/Q192525","display_name":"Workstation","level":2,"score":0.5952425599098206},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5427144169807434},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.43848109245300293},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33422860503196716},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27928435802459717}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2012.6399736","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2012.6399736","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 12th International Conference on Bioinformatics &amp; Bioengineering (BIBE)","raw_type":"proceedings-article"},{"id":"pmh:oai:centaur.reading.ac.uk:75782","is_oa":false,"landing_page_url":"https://centaur.reading.ac.uk/75782/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402273","display_name":"CentAUR (University of Reading)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71052956","host_organization_name":"University of Reading","host_organization_lineage":["https://openalex.org/I71052956"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"NonPeerReviewed"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W2001938458","https://openalex.org/W2024872854","https://openalex.org/W2038777423","https://openalex.org/W2049656505","https://openalex.org/W2097288488","https://openalex.org/W2121792371","https://openalex.org/W2136482257","https://openalex.org/W2161427213","https://openalex.org/W2161645441","https://openalex.org/W3124594404"],"related_works":["https://openalex.org/W2982321410","https://openalex.org/W95465806","https://openalex.org/W2392004567","https://openalex.org/W2046296964","https://openalex.org/W2940029036","https://openalex.org/W4388292429","https://openalex.org/W2756595502","https://openalex.org/W1994814170","https://openalex.org/W2188310145","https://openalex.org/W2385076265"],"abstract_inverted_index":{"Because":[0],"of":[1,5,14,44,90,136],"the":[2,12,134,141,156,171],"ever-increasing":[3],"application":[4],"next-generation":[6],"sequencing":[7],"(NGS)":[8],"in":[9,83,133],"research,":[10],"and":[11,22,36,62,70,73,100,106,126,174],"expectation":[13],"faster":[15],"experiment":[16],"turn-around,":[17],"it":[18],"is":[19,94,130,167],"becoming":[20],"unfeasible":[21],"unscalable":[23],"for":[24,49],"analysis":[25,175],"to":[26,51,66,76,79,85,102,149,154,169],"be":[27,52,57,67,77],"done":[28],"exclusively":[29],"by":[30,111],"existing":[31],"trained":[32,78],"bioinformaticians.":[33],"Instead,":[34],"researchers":[35,72,145],"bench":[37],"biologists":[38,74],"are":[39],"performing":[40],"at":[41],"least":[42],"parts":[43],"most":[45],"analyses.":[46],"In":[47],"order":[48,84],"this":[50,159],"realized,":[53],"two":[54],"conditions":[55],"must":[56],"satisfied:":[58],"(1)":[59],"well":[60,113],"designed":[61],"accessible":[63,125,132],"tools":[64,82,118],"need":[65,75],"made":[68],"available,":[69],"(2)":[71],"use":[80],"such":[81],"confidently":[86],"handle":[87],"high":[88],"volumes":[89],"NGS":[91],"data.":[92],"Bio-Linux":[93,129,166],"a":[95,121],"fully":[96],"featured,":[97],"powerful,":[98],"configurable":[99],"easy":[101],"maintain":[103],"bioinformatics":[104,117,163],"workstation":[105],"helps":[107],"on":[108,140,165],"both":[109],"counts":[110],"offering":[112],"over":[114],"one":[115],"hundred":[116],"packaged":[119],"into":[120],"single":[122],"distribution,":[123],"easily":[124],"readily":[127],"usable.":[128],"also":[131],"form":[135],"virtual":[137],"images":[138],"or":[139],"cloud,":[142],"thus":[143],"providing":[144],"with":[146],"immediate":[147],"access":[148],"scalable":[150],"compute":[151],"infrastructure":[152],"required":[153],"run":[155],"analysis.":[157],"Furthermore":[158],"paper":[160],"discusses":[161],"how":[162],"training":[164],"helping":[168],"bridge":[170],"data":[172],"production":[173],"gap.":[176]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
