{"id":"https://openalex.org/W2074451728","doi":"https://doi.org/10.1109/bibe.2012.6399732","title":"Open source workflow systems in life sciences informatics","display_name":"Open source workflow systems in life sciences informatics","publication_year":2012,"publication_date":"2012-11-01","ids":{"openalex":"https://openalex.org/W2074451728","doi":"https://doi.org/10.1109/bibe.2012.6399732","mag":"2074451728"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2012.6399732","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2012.6399732","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 12th International Conference on Bioinformatics &amp; Bioengineering (BIBE)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/2566913","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003920963","display_name":"K. G. Achilleos","orcid":null},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":true,"raw_author_name":"K. G. Achilleos","raw_affiliation_strings":["Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084040777","display_name":"Christos Kannas","orcid":"https://orcid.org/0000-0001-7312-8193"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"C. C. Kannas","raw_affiliation_strings":["Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018674739","display_name":"Christos A. Nicolaou","orcid":"https://orcid.org/0000-0002-1466-6992"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"C. A. Nicolaou","raw_affiliation_strings":["Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079839426","display_name":"Constantinos S. Pattichis","orcid":"https://orcid.org/0000-0003-1271-8151"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"C. S. Pattichis","raw_affiliation_strings":["Department of Computer Science, University of Cyprus, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070268749","display_name":"Vasilis J. Promponas","orcid":"https://orcid.org/0000-0003-3352-4831"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"V. J. Promponas","raw_affiliation_strings":["Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus","Department of Biological Sciences, University of Cyprus , Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]},{"raw_affiliation_string":"Department of Biological Sciences, University of Cyprus , Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003920963"],"corresponding_institution_ids":["https://openalex.org/I34771391"],"apc_list":null,"apc_paid":null,"fwci":1.4741,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.88462005,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"552","last_page":"558"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.742363691329956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6995739936828613},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6576696038246155},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5973886251449585},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.4188675284385681},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3917485773563385},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3310561776161194},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20972594618797302},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1597534716129303},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.12853088974952698},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10259068012237549},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0885576605796814}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.742363691329956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6995739936828613},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6576696038246155},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5973886251449585},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.4188675284385681},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3917485773563385},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3310561776161194},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20972594618797302},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1597534716129303},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.12853088974952698},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10259068012237549},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0885576605796814},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2012.6399732","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2012.6399732","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 12th International Conference on Bioinformatics &amp; Bioengineering (BIBE)","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:2566913","is_oa":true,"landing_page_url":"https://zenodo.org/record/2566913","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"552\u2013558","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:2566913","is_oa":true,"landing_page_url":"https://zenodo.org/record/2566913","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"552\u2013558","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1480333175","https://openalex.org/W1583240815","https://openalex.org/W1663021616","https://openalex.org/W1801291838","https://openalex.org/W1835740130","https://openalex.org/W1979900513","https://openalex.org/W1990699137","https://openalex.org/W1994758559","https://openalex.org/W2018522320","https://openalex.org/W2024808072","https://openalex.org/W2043249762","https://openalex.org/W2123663722","https://openalex.org/W2129666400","https://openalex.org/W2130524976","https://openalex.org/W2136482257","https://openalex.org/W2137653635","https://openalex.org/W2142549205","https://openalex.org/W2150027950","https://openalex.org/W2153074919","https://openalex.org/W2154513453","https://openalex.org/W2161645441","https://openalex.org/W2172143128","https://openalex.org/W2535798755","https://openalex.org/W2913513779","https://openalex.org/W3015465063","https://openalex.org/W4234499840","https://openalex.org/W4252427272","https://openalex.org/W6628384819","https://openalex.org/W6679517723","https://openalex.org/W6758897570","https://openalex.org/W6807571820"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W2407382301","https://openalex.org/W1495820741","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W2401910071","https://openalex.org/W2189429352","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"A":[0],"simple":[1],"yet":[2],"powerful":[3],"programming":[4],"tool":[5],"enabling":[6],"in":[7,35,66,75,139],"silico":[8],"experimentation,":[9],"end-to-end":[10],"data":[11,102],"management":[12],"through":[13],"web":[14],"services":[15],"as":[16,18],"well":[17],"use":[19,95],"of":[20,96,133],"grid":[21],"and":[22,45,64,122],"cloud":[23],"processing":[24],"power":[25],"is":[26,31,80,129],"scientific":[27,47,90,142],"workflows.":[28],"This":[29],"technology":[30],"receiving":[32],"considerable":[33],"interest":[34],"recent":[36],"years":[37],"primarily":[38],"due":[39],"to":[40,43],"its":[41],"ability":[42],"promote":[44],"support":[46],"collaboration":[48],"among":[49],"large":[50],"distributed":[51,97],"research":[52],"teams.":[53],"The":[54],"paper":[55],"reviews":[56],"the":[57],"Scientific":[58],"Workflows":[59],"Management":[60],"Systems":[61],"(SWMS)":[62],"field":[63],"investigates":[65],"detail":[67],"popular":[68],"open":[69,112,117],"source":[70,113],"workflow":[71],"systems":[72,87],"used":[73],"commonly":[74],"life":[76],"sciences":[77],"informatics.":[78],"Emphasis":[79],"placed":[81],"on":[82],"features":[83,121],"which":[84],"make":[85],"these":[86],"attractive":[88],"for":[89],"use,":[91],"e.g.":[92],"user":[93],"friendliness,":[94],"resources,":[98],"reusability,":[99],"provenance,":[100],"collaboration,":[101],"integration,":[103],"etc.":[104],"Our":[105],"conclusions":[106],"indicate":[107],"that":[108,127],"although":[109],"SWMS,":[110],"including":[111],"ones,":[114],"have":[115],"several":[116],"issues,":[118],"their":[119],"unique":[120],"strong":[123],"momentum":[124],"clearly":[125],"suggest":[126],"it":[128],"only":[130],"a":[131],"matter":[132],"time":[134],"before":[135],"they":[136],"are":[137],"adopted":[138],"even":[140],"more":[141],"fields.":[143]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
