{"id":"https://openalex.org/W1969869061","doi":"https://doi.org/10.1109/bibe.2012.6399710","title":"Experiences in designing a distributed service-oriented platform for in-silico biomarker discovery and validation","display_name":"Experiences in designing a distributed service-oriented platform for in-silico biomarker discovery and validation","publication_year":2012,"publication_date":"2012-11-01","ids":{"openalex":"https://openalex.org/W1969869061","doi":"https://doi.org/10.1109/bibe.2012.6399710","mag":"1969869061"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2012.6399710","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2012.6399710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 12th International Conference on Bioinformatics &amp; Bioengineering (BIBE)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035010643","display_name":"Ioan Lucian Muntean","orcid":null},"institutions":[{"id":"https://openalex.org/I158333966","display_name":"Technical University of Cluj-Napoca","ror":"https://ror.org/03r8nwp71","country_code":"RO","type":"education","lineage":["https://openalex.org/I158333966"]}],"countries":["RO"],"is_corresponding":true,"raw_author_name":"Ioan Lucian Muntean","raw_affiliation_strings":["Computer Science Department, Technical Univesity of Cluj-Napoca, Romania"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Technical Univesity of Cluj-Napoca, Romania","institution_ids":["https://openalex.org/I158333966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056629504","display_name":"Bogdan Rotaru","orcid":null},"institutions":[{"id":"https://openalex.org/I158333966","display_name":"Technical University of Cluj-Napoca","ror":"https://ror.org/03r8nwp71","country_code":"RO","type":"education","lineage":["https://openalex.org/I158333966"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"Bogdan Rotaru","raw_affiliation_strings":["Computer Science Department, Technical Univesity of Cluj-Napoca, Romania"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Technical Univesity of Cluj-Napoca, Romania","institution_ids":["https://openalex.org/I158333966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017245062","display_name":"Ramona Suharoschi","orcid":"https://orcid.org/0000-0002-8306-8670"},"institutions":[{"id":"https://openalex.org/I139046659","display_name":"University of Agricultural Sciences, Dharwad","ror":"https://ror.org/02qn0hf26","country_code":"IN","type":"education","lineage":["https://openalex.org/I139046659","https://openalex.org/I179420787"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ramona Suharoschi","raw_affiliation_strings":["Food Science and Technology Department, University of Agricultural Sciences and Veterinary Medicine, Romania","Food Science and Technology Department, University of Agricultural Sciences and Veterinary Medicine, Cluj-Napoca, Romania"],"affiliations":[{"raw_affiliation_string":"Food Science and Technology Department, University of Agricultural Sciences and Veterinary Medicine, Romania","institution_ids":[]},{"raw_affiliation_string":"Food Science and Technology Department, University of Agricultural Sciences and Veterinary Medicine, Cluj-Napoca, Romania","institution_ids":["https://openalex.org/I139046659"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029560113","display_name":"Cristina Adela Iuga","orcid":"https://orcid.org/0000-0002-0345-0993"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cristina Iuga","raw_affiliation_strings":["Drug Analysis Department, University of Medicine and Pharmacy, Romania","Drug Analysis Department University of Medicine and Pharmacy, Cluj-Napoca, Romania"],"affiliations":[{"raw_affiliation_string":"Drug Analysis Department, University of Medicine and Pharmacy, Romania","institution_ids":[]},{"raw_affiliation_string":"Drug Analysis Department University of Medicine and Pharmacy, Cluj-Napoca, Romania","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035010643"],"corresponding_institution_ids":["https://openalex.org/I158333966"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05077849,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"81 82","issue":null,"first_page":"74","last_page":"79"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7048407196998596},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6491265296936035},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5342795848846436},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.45879173278808594},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.4363703429698944},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.4213736951351166},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42112982273101807},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4198416769504547},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.41969743371009827},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4109940528869629},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.37134966254234314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14294064044952393}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7048407196998596},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6491265296936035},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5342795848846436},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.45879173278808594},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.4363703429698944},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.4213736951351166},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42112982273101807},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4198416769504547},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.41969743371009827},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4109940528869629},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.37134966254234314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14294064044952393},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2012.6399710","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2012.6399710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 12th International Conference on Bioinformatics &amp; Bioengineering (BIBE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W25683372","https://openalex.org/W91108901","https://openalex.org/W1547806338","https://openalex.org/W1553953207","https://openalex.org/W1936883278","https://openalex.org/W1979229300","https://openalex.org/W2024786468","https://openalex.org/W2062926086","https://openalex.org/W2076826881","https://openalex.org/W2087025987","https://openalex.org/W2109108939","https://openalex.org/W2143129697","https://openalex.org/W2143969914","https://openalex.org/W2146980885","https://openalex.org/W2149194035","https://openalex.org/W2161732286","https://openalex.org/W2162466002","https://openalex.org/W4241422942","https://openalex.org/W4302502927","https://openalex.org/W6640623298"],"related_works":["https://openalex.org/W1539981706","https://openalex.org/W1485011350","https://openalex.org/W2031369865","https://openalex.org/W4233701783","https://openalex.org/W3089769884","https://openalex.org/W1969295409","https://openalex.org/W2010715465","https://openalex.org/W3150792906","https://openalex.org/W2039928317","https://openalex.org/W1999883774"],"abstract_inverted_index":{"In":[0,23],"order":[1],"to":[2],"design":[3],"efficient":[4],"biomarkers":[5],"for":[6,35],"personalized":[7],"medicine,":[8],"one":[9],"needs":[10],"correlated":[11],"insights":[12],"from":[13],"different":[14],"multi-omics":[15,32],"perspectives,":[16],"such":[17,70],"as":[18,71,96],"proteomics,":[19],"genomics,":[20],"transcriptomics":[21],"etc.":[22],"this":[24,58],"paper,":[25],"we":[26,43],"address":[27],"the":[28,51,79,86,101,104,118,128,141],"challenge":[29],"of":[30,64,82,88,103],"integrating":[31],"data":[33,55,68,109],"repositories":[34],"in-silico":[36],"biomarker":[37],"discovery":[38],"and":[39,53,74,91,134],"validation.":[40],"For":[41],"that,":[42],"have":[44],"designed":[45],"a":[46],"software":[47],"platform":[48,59,105,114],"based":[49],"on":[50,117],"genomic":[52],"proteomic":[54],"overlay.":[56],"Currently,":[57],"provides":[60],"an":[61],"integrated":[62],"way":[63],"querying":[65],"bioinformatics":[66],"major":[67],"sources":[69,110],"GenBank,":[72],"UniProt,":[73],"ArrayExpress.":[75],"Our":[76],"approach":[77],"integrates":[78],"client-side":[80],"API":[81],"these":[83,137],"resources":[84],"with":[85,106],"support":[87],"web":[89],"services":[90,146],"cloud":[92],"(Google":[93],"App":[94],"Engine),":[95],"enabling":[97],"technologies.":[98],"As":[99],"such,":[100],"extension":[102],"further":[107],"omics":[108],"becomes":[111],"straightforward.":[112],"The":[113,121],"was":[115],"evaluated":[116],"Google":[119],"Cloud.":[120],"first":[122],"results":[123],"are":[124],"promising,":[125],"showing":[126],"that":[127],"queries":[129],"can":[130],"easily":[131],"be":[132],"formulated":[133],"executed":[135],"against":[136],"public":[138],"community":[139],"resources,":[140],"overhead":[142],"introduced":[143],"by":[144],"our":[145],"being":[147],"rather":[148],"small.":[149]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
