{"id":"https://openalex.org/W2043921433","doi":"https://doi.org/10.1109/bibe.2008.4696848","title":"Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference versus cladistics","display_name":"Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference versus cladistics","publication_year":2008,"publication_date":"2008-10-01","ids":{"openalex":"https://openalex.org/W2043921433","doi":"https://doi.org/10.1109/bibe.2008.4696848","mag":"2043921433"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2008.4696848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057391353","display_name":"Arash Shaban\u2010Nejad","orcid":"https://orcid.org/0000-0003-2047-4759"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Arash Shaban-Nejad","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","[Department of Computer Science and Software Engineering, Concordia University, Montreal, QC]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"[Department of Computer Science and Software Engineering, Concordia University, Montreal, QC]","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071571704","display_name":"Volker Haarslev","orcid":"https://orcid.org/0000-0002-1669-7813"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Volker Haarslev","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","[Department of Computer Science and Software Engineering, Concordia University, Montreal, QC]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"[Department of Computer Science and Software Engineering, Concordia University, Montreal, QC]","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I60158472"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.970300018787384,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cladistics","display_name":"Cladistics","score":0.7842559218406677},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6443278193473816},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6302169561386108},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6241443157196045},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.5522685050964355},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5500038862228394},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.33933764696121216},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33059531450271606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2844022810459137},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.11284857988357544},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.058144330978393555}],"concepts":[{"id":"https://openalex.org/C20822588","wikidata":"https://www.wikidata.org/wiki/Q192210","display_name":"Cladistics","level":4,"score":0.7842559218406677},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6443278193473816},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6302169561386108},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6241443157196045},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.5522685050964355},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5500038862228394},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33933764696121216},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33059531450271606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2844022810459137},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.11284857988357544},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.058144330978393555},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2008.4696848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.148.4461","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.148.4461","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://users.encs.concordia.ca/~haarslev/publications/BIBE2008.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W173647602","https://openalex.org/W194637477","https://openalex.org/W1517437198","https://openalex.org/W1542530661","https://openalex.org/W1555563750","https://openalex.org/W1560486522","https://openalex.org/W1564896067","https://openalex.org/W1573514622","https://openalex.org/W1577703384","https://openalex.org/W1589935762","https://openalex.org/W1670748022","https://openalex.org/W1710422233","https://openalex.org/W1855934725","https://openalex.org/W1964465385","https://openalex.org/W1981182988","https://openalex.org/W1994432921","https://openalex.org/W2017592816","https://openalex.org/W2024873396","https://openalex.org/W2034143539","https://openalex.org/W2057761625","https://openalex.org/W2079511939","https://openalex.org/W2082581672","https://openalex.org/W2112966095","https://openalex.org/W2120390556","https://openalex.org/W2120713972","https://openalex.org/W2137079713","https://openalex.org/W2140887277","https://openalex.org/W2144907661","https://openalex.org/W2155086405","https://openalex.org/W2156582908","https://openalex.org/W2160410485","https://openalex.org/W2170817105","https://openalex.org/W2326737771","https://openalex.org/W2333598490","https://openalex.org/W2334717273","https://openalex.org/W2502798149","https://openalex.org/W3087975536","https://openalex.org/W3199943451","https://openalex.org/W4239599841","https://openalex.org/W4239696231","https://openalex.org/W4243506212","https://openalex.org/W4251535181","https://openalex.org/W4285719527","https://openalex.org/W6607902833","https://openalex.org/W6634065907","https://openalex.org/W6634671687","https://openalex.org/W6635220730","https://openalex.org/W6637436129","https://openalex.org/W6637782871","https://openalex.org/W6638850068","https://openalex.org/W6681340555"],"related_works":["https://openalex.org/W2082100113","https://openalex.org/W4210539245","https://openalex.org/W1988014345","https://openalex.org/W2917506039","https://openalex.org/W2387249024","https://openalex.org/W333337729","https://openalex.org/W2137085253","https://openalex.org/W4226031762","https://openalex.org/W3217241434","https://openalex.org/W2098916078"],"abstract_inverted_index":{"We":[0],"propose":[1],"the":[2,18,29,61,65],"use":[3],"of":[4,31,42,64],"formal":[5],"ontological":[6,44],"inferencing,":[7],"rather":[8],"than":[9],"cladistics,":[10],"to":[11,16,52],"reconstruct":[12],"phylogeny":[13,30],"trees":[14],"and":[15,59],"analyze":[17],"evolutionary":[19,62],"relationships":[20],"between":[21],"species.":[22],"For":[23],"this":[24],"experiment,":[25],"we":[26],"focused":[27],"on":[28],"fungi.":[32],"Lexical":[33],"chaining":[34],"technique":[35],"has":[36,49],"been":[37,50],"used":[38],"for":[39,57],"incremental":[40],"population":[41],"evolving":[43],"elements.":[45],"Also":[46],"category":[47],"theory":[48],"employed":[51],"provide":[53],"an":[54],"underlying":[55],"formalism":[56],"capturing":[58],"analyzing":[60],"behavior":[63],"system.":[66]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
