{"id":"https://openalex.org/W2016413795","doi":"https://doi.org/10.1109/bibe.2008.4696715","title":"Towards dynamic database infrastructures for mouse genetics","display_name":"Towards dynamic database infrastructures for mouse genetics","publication_year":2008,"publication_date":"2008-10-01","ids":{"openalex":"https://openalex.org/W2016413795","doi":"https://doi.org/10.1109/bibe.2008.4696715","mag":"2016413795"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2008.4696715","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696715","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.rug.nl/en/publications/63b89ace-971c-43a3-8f07-0766785a0861","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Morris A. Swertz","raw_affiliation_strings":["Department of Genetics, University Medical Center Groningen, Groningen, Netherlands","Groningen Bioinformatics Centre, University of Groningam, Haren, Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, University Medical Center Groningen, Groningen, Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"Groningen Bioinformatics Centre, University of Groningam, Haren, Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105362622","display_name":"Damian Smedley","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Damian Smedley","raw_affiliation_strings":["European Bioinformatics Institute, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Katy Wolstencroft","raw_affiliation_strings":["School of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027845799","display_name":"Rudi Alberts","orcid":"https://orcid.org/0000-0002-3654-4873"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rudi Alberts","raw_affiliation_strings":["Department Experimental Mouse Genetics, Helmholtz Centre for Infection Research, Brunswick, Germany"],"affiliations":[{"raw_affiliation_string":"Department Experimental Mouse Genetics, Helmholtz Centre for Infection Research, Brunswick, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046058680","display_name":"M. Zouberakis","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Zouberakis","raw_affiliation_strings":["BSRC, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"BSRC, Athens, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058794534","display_name":"Vassilis Aidinis","orcid":"https://orcid.org/0000-0001-9531-7729"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vassilis Aidinis","raw_affiliation_strings":["BSRC, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"BSRC, Athens, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038499176","display_name":"Klaus Schughart","orcid":"https://orcid.org/0000-0002-6824-7523"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Klaus Schughart","raw_affiliation_strings":["Department Experimental Mouse Genetics, Helmholtz Centre for Infection Research, Brunswick, Germany"],"affiliations":[{"raw_affiliation_string":"Department Experimental Mouse Genetics, Helmholtz Centre for Infection Research, Brunswick, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul N. Schofield","raw_affiliation_strings":["Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107252193","display_name":"Ritsert C. Jansen","orcid":null},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ritsert C. Jansen","raw_affiliation_strings":["Groningen Bioinformatics Centre, University of Groningam, Haren, Netherlands"],"affiliations":[{"raw_affiliation_string":"Groningen Bioinformatics Centre, University of Groningam, Haren, Netherlands","institution_ids":["https://openalex.org/I169381384"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5052368642"],"corresponding_institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.08713948,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/european-commission","display_name":"European commission","score":0.731645405292511},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6116588115692139},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5804470181465149},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5503270030021667},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47789037227630615},{"id":"https://openalex.org/keywords/commission","display_name":"Commission","score":0.4263906478881836},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35461682081222534},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2524387538433075},{"id":"https://openalex.org/keywords/european-union","display_name":"European union","score":0.20587092638015747},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.19065117835998535},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19040095806121826},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.11249047517776489},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.10783374309539795}],"concepts":[{"id":"https://openalex.org/C3020782553","wikidata":"https://www.wikidata.org/wiki/Q8880","display_name":"European commission","level":3,"score":0.731645405292511},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6116588115692139},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5804470181465149},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5503270030021667},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47789037227630615},{"id":"https://openalex.org/C2776034101","wikidata":"https://www.wikidata.org/wiki/Q1509347","display_name":"Commission","level":2,"score":0.4263906478881836},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35461682081222534},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2524387538433075},{"id":"https://openalex.org/C2910001868","wikidata":"https://www.wikidata.org/wiki/Q458","display_name":"European union","level":2,"score":0.20587092638015747},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.19065117835998535},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19040095806121826},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.11249047517776489},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.10783374309539795},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105639569","wikidata":"https://www.wikidata.org/wiki/Q582577","display_name":"Economic policy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/bibe.2008.4696715","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696715","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/09dcaca0-97ce-40de-931d-82097ccd2f3b","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/09dcaca0-97ce-40de-931d-82097ccd2f3b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Swertz, M A, Smedley, D, Wolstencroft, K, Alberts, R, Zouberakis, M, Aidinis, V, Schughart, K, Schofield, P N & Jansen, R C 2008, Towards dynamic database infrastructures for mouse genetics. in 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008|IEEE Int. Conf. BioInformatics BioEng., BIBE. 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008, Athens, 1/07/08. https://doi.org/10.1109/BIBE.2008.4696715","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/09dcaca0-97ce-40de-931d-82097ccd2f3b","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/towards-dynamic-database-infrastructures-for-mouse-genetics(09dcaca0-97ce-40de-931d-82097ccd2f3b).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Swertz, M A, Smedley, D, Wolstencroft, K, Alberts, R, Zouberakis, M, Aidinis, V, Schughart, K, Schofield, P N & Jansen, R C 2008, Towards dynamic database infrastructures for mouse genetics. in 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008|IEEE Int. Conf. BioInformatics BioEng., BIBE. 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008, Athens, 1/07/08. https://doi.org/10.1109/BIBE.2008.4696715","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:rug:oai:pure.rug.nl:publications/63b89ace-971c-43a3-8f07-0766785a0861","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/63b89ace-971c-43a3-8f07-0766785a0861","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"8th IEEE International Conference on BioInformatics and BioEngineering, 2008. BIBE 2008","raw_type":"info:eu-repo/semantics/bookpart"}],"best_oa_location":{"id":"pmh:rug:oai:pure.rug.nl:publications/63b89ace-971c-43a3-8f07-0766785a0861","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/63b89ace-971c-43a3-8f07-0766785a0861","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"8th IEEE International Conference on BioInformatics and BioEngineering, 2008. BIBE 2008","raw_type":"info:eu-repo/semantics/bookpart"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1963542257","https://openalex.org/W1969761972","https://openalex.org/W1992012761","https://openalex.org/W1996902131","https://openalex.org/W2054251921","https://openalex.org/W2059942711","https://openalex.org/W2101648527","https://openalex.org/W2102729801","https://openalex.org/W2104878392","https://openalex.org/W2108334325","https://openalex.org/W2108824686","https://openalex.org/W2113758252","https://openalex.org/W2115322074","https://openalex.org/W2120789186","https://openalex.org/W2123060905","https://openalex.org/W2130743074","https://openalex.org/W2133445706","https://openalex.org/W2133672829","https://openalex.org/W2137653635","https://openalex.org/W2144254425","https://openalex.org/W2146453000","https://openalex.org/W2148860875","https://openalex.org/W2154003332","https://openalex.org/W2159482845","https://openalex.org/W2160697532","https://openalex.org/W2161065250","https://openalex.org/W2161645441","https://openalex.org/W2164787039","https://openalex.org/W2165482734","https://openalex.org/W4229880569","https://openalex.org/W4255885845"],"related_works":["https://openalex.org/W2083674464","https://openalex.org/W4285379861","https://openalex.org/W2322850402","https://openalex.org/W2437262919","https://openalex.org/W3125791156","https://openalex.org/W4241219018","https://openalex.org/W1599375153","https://openalex.org/W2380483444","https://openalex.org/W2031458487","https://openalex.org/W1971020767"],"abstract_inverted_index":{"A":[0],"growing":[1],"array":[2],"of":[3,12,26,31,34,37,46,61],"biotechnologies":[4],"is":[5],"being":[6],"used":[7],"to":[8,48,73],"study":[9],"the":[10,32,35,44,59,64],"genetics":[11],"complex":[13],"biomolecular":[14],"traits":[15],"in":[16],"laboratory":[17],"mice":[18],"as":[19],"models":[20],"for":[21],"human":[22],"disease.":[23],"Combined":[24],"analysis":[25],"these":[27,62],"datasets":[28],"provides":[29],"much":[30],"power":[33],"approach":[36],"functional":[38],"genomics":[39],"but":[40],"this":[41,78],"depends":[42],"on":[43,76,86],"ability":[45],"databases":[47],"exchange":[49],"data":[50],"with":[51,55],"each":[52],"other":[53],"and":[54,90],"analytical":[56],"software.":[57],"In":[58],"light":[60],"challenges":[63],"European":[65],"Commission":[66],"has":[67],"funded":[68],"a":[69],"coordination":[70],"action,":[71],"CASIMIR,":[72],"make":[74],"recommendations":[75],"how":[77],"need":[79],"might":[80],"be":[81],"fulfilled.":[82],"We":[83],"here":[84],"report":[85],"two":[87],"pilot":[88],"projects":[89],"distill":[91],"preliminary":[92],"recommendations.":[93]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}